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Searched refs:ladder3_minus (Results 1 – 5 of 5) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A Dconcordance.h29 Ladder_T ladder3_plus, Ladder_T ladder3_minus,
47 Ladder_T ladder3_plus, Ladder_T ladder3_minus,
H A Dconcordance.c327 Ladder_T ladder3_plus, Ladder_T ladder3_minus,
391 hits3 = Ladder_hits_for_score(&nhits3,ladder3_minus,hitlistpool,score3);
695 Ladder_T ladder3_plus, Ladder_T ladder3_minus, in Concordance_pair_up_genome() argument
753 Ladder_merge(ladder3_minus,newladder3_minus); in Concordance_pair_up_genome()
765 Ladder_merge(ladder3_minus,newladder3_minus,hitlistpool); in Concordance_pair_up_genome()
772 Ladder_dump_nhits(ladder3_minus); in Concordance_pair_up_genome()
955 Ladder_gc_duplicates(ladder3_minus); in Concordance_pair_up_genome()
1512 Ladder_T ladder3_plus, Ladder_T ladder3_minus, in Concordance_pair_up_distant() argument
1567 Ladder_merge(ladder3_minus,newladder3_minus); in Concordance_pair_up_distant()
1579 Ladder_merge(ladder3_minus,newladder3_minus,hitlistpool); in Concordance_pair_up_distant()
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H A Dladder.h43 T *ladder3_plus, T *ladder3_minus,
H A Dladder.c575 T *ladder3_plus, T *ladder3_minus, in Ladder_to_hits() argument
581 *hits3 = Ladder_hitlist(*ladder3_minus,*hits3,hitlistpool); in Ladder_to_hits()
586 Ladder_gc_duplicates(*ladder3_minus); in Ladder_to_hits()
591 Ladder_free(&(*ladder3_minus)); in Ladder_to_hits()
H A Dstage1hr.c2350 Ladder_missing_paired_p(ladder3_minus,/*maxscore*/0) == true in paired_read()