Searched refs:ladder3_minus (Results 1 – 5 of 5) sorted by relevance
/dports/biology/gmap/gmap-2020-09-12/src/ |
H A D | concordance.h | 29 Ladder_T ladder3_plus, Ladder_T ladder3_minus, 47 Ladder_T ladder3_plus, Ladder_T ladder3_minus,
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H A D | concordance.c | 327 Ladder_T ladder3_plus, Ladder_T ladder3_minus, 391 hits3 = Ladder_hits_for_score(&nhits3,ladder3_minus,hitlistpool,score3); 695 Ladder_T ladder3_plus, Ladder_T ladder3_minus, in Concordance_pair_up_genome() argument 753 Ladder_merge(ladder3_minus,newladder3_minus); in Concordance_pair_up_genome() 765 Ladder_merge(ladder3_minus,newladder3_minus,hitlistpool); in Concordance_pair_up_genome() 772 Ladder_dump_nhits(ladder3_minus); in Concordance_pair_up_genome() 955 Ladder_gc_duplicates(ladder3_minus); in Concordance_pair_up_genome() 1512 Ladder_T ladder3_plus, Ladder_T ladder3_minus, in Concordance_pair_up_distant() argument 1567 Ladder_merge(ladder3_minus,newladder3_minus); in Concordance_pair_up_distant() 1579 Ladder_merge(ladder3_minus,newladder3_minus,hitlistpool); in Concordance_pair_up_distant() [all …]
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H A D | ladder.h | 43 T *ladder3_plus, T *ladder3_minus,
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H A D | ladder.c | 575 T *ladder3_plus, T *ladder3_minus, in Ladder_to_hits() argument 581 *hits3 = Ladder_hitlist(*ladder3_minus,*hits3,hitlistpool); in Ladder_to_hits() 586 Ladder_gc_duplicates(*ladder3_minus); in Ladder_to_hits() 591 Ladder_free(&(*ladder3_minus)); in Ladder_to_hits()
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H A D | stage1hr.c | 2350 Ladder_missing_paired_p(ladder3_minus,/*maxscore*/0) == true in paired_read()
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