| /dports/biology/ugene/ugene-40.1/src/libs_3rdparty/samtools/src/samtools/ |
| H A D | bam_pileup.c | 18 } lbnode_t; typedef
24 lbnode_t **buf;
43 static inline lbnode_t *mp_alloc(mempool_t *mp) in mp_alloc()
46 if (mp->n == 0) return (lbnode_t*)calloc(1, sizeof(lbnode_t)); in mp_alloc()
49 static inline void mp_free(mempool_t *mp, lbnode_t *p) in mp_free()
54 mp->buf = (lbnode_t**)realloc(mp->buf, sizeof(lbnode_t*) * mp->max); in mp_free()
153 lbnode_t *head, *tail, *dummy;
200 lbnode_t *p, *q; in bam_plp_next()
291 lbnode_t *p, *q; in bam_plp_reset()
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| /dports/biology/stringtie/stringtie-2.1.1/samtools-0.1.18/ |
| H A D | bam_pileup.c | 18 } lbnode_t; typedef
24 lbnode_t **buf;
43 static inline lbnode_t *mp_alloc(mempool_t *mp) in mp_alloc()
46 if (mp->n == 0) return (lbnode_t*)calloc(1, sizeof(lbnode_t)); in mp_alloc()
49 static inline void mp_free(mempool_t *mp, lbnode_t *p) in mp_free()
54 mp->buf = (lbnode_t**)realloc(mp->buf, sizeof(lbnode_t*) * mp->max); in mp_free()
153 lbnode_t *head, *tail, *dummy;
200 lbnode_t *p, *q; in bam_plp_next()
291 lbnode_t *p, *q; in bam_plp_reset()
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| /dports/biology/seqan1/seqan-1.3.1/lib/samtools/ |
| H A D | bam_pileup.c | 18 } lbnode_t; typedef
24 lbnode_t **buf;
43 static inline lbnode_t *mp_alloc(mempool_t *mp) in mp_alloc()
46 if (mp->n == 0) return (lbnode_t*)calloc(1, sizeof(lbnode_t)); in mp_alloc()
49 static inline void mp_free(mempool_t *mp, lbnode_t *p) in mp_free()
54 mp->buf = (lbnode_t**)realloc(mp->buf, sizeof(lbnode_t*) * mp->max); in mp_free()
153 lbnode_t *head, *tail, *dummy;
200 lbnode_t *p, *q; in bam_plp_next()
291 lbnode_t *p, *q; in bam_plp_reset()
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| /dports/biology/kallisto/kallisto-0.46.1/ext/htslib/ |
| H A D | sam.c | 1814 } lbnode_t; typedef
1818 lbnode_t **buf;
1837 static inline lbnode_t *mp_alloc(mempool_t *mp) in mp_alloc()
1840 if (mp->n == 0) return (lbnode_t*)calloc(1, sizeof(lbnode_t)); in mp_alloc()
1848 mp->buf = (lbnode_t**)realloc(mp->buf, sizeof(lbnode_t*) * mp->max); in mp_free()
1943 KHASH_MAP_INIT_STR(olap_hash, lbnode_t *)
1948 lbnode_t *head, *tail;
1988 lbnode_t *p, *pnext; in bam_plp_destroy()
2221 lbnode_t **pptr = &iter->head; in bam_plp_next()
2223 lbnode_t *p = *pptr; in bam_plp_next()
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| /dports/biology/vt/vt-0.57721/lib/htslib/ |
| H A D | sam.c | 2055 } lbnode_t; typedef
2059 lbnode_t **buf;
2078 static inline lbnode_t *mp_alloc(mempool_t *mp) in mp_alloc()
2081 if (mp->n == 0) return (lbnode_t*)calloc(1, sizeof(lbnode_t)); in mp_alloc()
2089 mp->buf = (lbnode_t**)realloc(mp->buf, sizeof(lbnode_t*) * mp->max); in mp_free()
2184 KHASH_MAP_INIT_STR(olap_hash, lbnode_t *)
2189 lbnode_t *head, *tail;
2229 lbnode_t *p, *pnext; in bam_plp_destroy()
2462 lbnode_t **pptr = &iter->head; in bam_plp_next()
2464 lbnode_t *p = *pptr; in bam_plp_next()
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| /dports/biology/stacks/stacks-2.4/htslib/ |
| H A D | sam.c | 2048 } lbnode_t; typedef
2052 lbnode_t **buf;
2071 static inline lbnode_t *mp_alloc(mempool_t *mp) in mp_alloc()
2074 if (mp->n == 0) return (lbnode_t*)calloc(1, sizeof(lbnode_t)); in mp_alloc()
2082 mp->buf = (lbnode_t**)realloc(mp->buf, sizeof(lbnode_t*) * mp->max); in mp_free()
2177 KHASH_MAP_INIT_STR(olap_hash, lbnode_t *)
2182 lbnode_t *head, *tail;
2222 lbnode_t *p, *pnext; in bam_plp_destroy()
2455 lbnode_t **pptr = &iter->head; in bam_plp_next()
2457 lbnode_t *p = *pptr; in bam_plp_next()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/ |
| H A D | sam.c | 2225 } lbnode_t; typedef
2229 lbnode_t **buf;
2248 static inline lbnode_t *mp_alloc(mempool_t *mp) in mp_alloc()
2251 if (mp->n == 0) return (lbnode_t*)calloc(1, sizeof(lbnode_t)); in mp_alloc()
2259 mp->buf = (lbnode_t**)realloc(mp->buf, sizeof(lbnode_t*) * mp->max); in mp_free()
2354 KHASH_MAP_INIT_STR(olap_hash, lbnode_t *)
2359 lbnode_t *head, *tail;
2399 lbnode_t *p, *pnext; in bam_plp_destroy()
2632 lbnode_t **pptr = &iter->head; in bam_plp_next()
2634 lbnode_t *p = *pptr; in bam_plp_next()
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| /dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/ |
| H A D | sam.c | 4118 } lbnode_t; typedef
4122 lbnode_t **buf;
4141 static inline lbnode_t *mp_alloc(mempool_t *mp) in mp_alloc()
4144 if (mp->n == 0) return (lbnode_t*)calloc(1, sizeof(lbnode_t)); in mp_alloc()
4152 mp->buf = (lbnode_t**)realloc(mp->buf, sizeof(lbnode_t*) * mp->max); in mp_free()
4329 KHASH_MAP_INIT_STR(olap_hash, lbnode_t *)
4334 lbnode_t *head, *tail;
4376 lbnode_t *p, *pnext; in bam_plp_destroy()
4626 lbnode_t **pptr = &iter->head; in bam_plp64_next()
4628 lbnode_t *p = *pptr; in bam_plp64_next()
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| /dports/biology/py-pysam/pysam-0.18.0/htslib/ |
| H A D | sam.c | 5033 } lbnode_t; typedef
5037 lbnode_t **buf;
5056 static inline lbnode_t *mp_alloc(mempool_t *mp) in mp_alloc()
5059 if (mp->n == 0) return (lbnode_t*)calloc(1, sizeof(lbnode_t)); in mp_alloc()
5067 mp->buf = (lbnode_t**)realloc(mp->buf, sizeof(lbnode_t*) * mp->max); in mp_free()
5292 KHASH_MAP_INIT_STR(olap_hash, lbnode_t *)
5297 lbnode_t *head, *tail;
5339 lbnode_t *p, *pnext; in bam_plp_destroy()
5626 lbnode_t **pptr = &iter->head; in bam_plp64_next()
5628 lbnode_t *p = *pptr; in bam_plp64_next()
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| /dports/biology/htslib/htslib-1.14/ |
| H A D | sam.c | 5033 } lbnode_t; typedef
5037 lbnode_t **buf;
5056 static inline lbnode_t *mp_alloc(mempool_t *mp) in mp_alloc()
5059 if (mp->n == 0) return (lbnode_t*)calloc(1, sizeof(lbnode_t)); in mp_alloc()
5067 mp->buf = (lbnode_t**)realloc(mp->buf, sizeof(lbnode_t*) * mp->max); in mp_free()
5292 KHASH_MAP_INIT_STR(olap_hash, lbnode_t *)
5297 lbnode_t *head, *tail;
5339 lbnode_t *p, *pnext; in bam_plp_destroy()
5626 lbnode_t **pptr = &iter->head; in bam_plp64_next()
5628 lbnode_t *p = *pptr; in bam_plp64_next()
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