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/dports/biology/wise/wise2.4.1/src/dynlibsrc/
H A Dbasematrix.c57 if( leni*lenj*statesize/1024 > max_matrix_bytes) in can_make_explicit_matrix()
161 for(i=0;i<obj->leni;i++) in free_BaseMatrix()
202 BaseMatrix * BaseMatrix_alloc_matrix(int leni,int lenj) in BaseMatrix_alloc_matrix() argument
223 for(i=0;i<leni;i++) in BaseMatrix_alloc_matrix()
228 for(i=0;i<leni;i++) { in BaseMatrix_alloc_matrix()
238 for(i=0;i<leni;i++) { in BaseMatrix_alloc_matrix()
244 out->leni=out->maxleni=leni; in BaseMatrix_alloc_matrix()
280 if( obj->maxleni < leni ) { in expand_BaseMatrix()
283 obj->maxleni=obj->leni=leni; in expand_BaseMatrix()
288 for(i=0;i<obj->leni;i++) { in expand_BaseMatrix()
[all …]
H A Dbasematrix.h100 int leni; /* leni for above matrix */ member
172 boolean Wise2_can_make_explicit_matrix(int leni,int lenj,int statesize);
237 BaseMatrix * Wise2_BaseMatrix_alloc_matrix(int leni,int lenj);
277 boolean Wise2_expand_BaseMatrix(BaseMatrix * obj,int leni,int lenj);
H A Dshattermatrix.dy125 int leni;
136 leni = endi - starti;
138 /* fprintf(stderr,"Allocating area of %d,%d %d cells\n",leni,(endj-startj),leni*(endj-startj));*/
140 out->mat = calloc(leni,sizeof(int *));
142 for(i=0;i<leni;i++) {
/dports/biology/mafft/mafft-7.267-without-extensions/core/
H A Dnewick2mafft.rb97 leni = [-1,-1]
105 leni[0] = $2.to_f * scale
107 leni[1] = $4.to_f * scale
109 if leni[0] > 10 || leni[1] > 10 then
125 leni.reverse!
132 printf( "%5d %5d %10.5f %10.5f\n", memi[0], memi[1], leni[0], leni[1] )
H A Dregionalrealignment.rb252 leni = [-1,-1]
260 leni[0] = $2.to_f * scale
262 leni[1] = $4.to_f * scale
264 if leni[0] > 10 || leni[1] > 10 then
280 leni.reverse!
287 mtreefp.printf( "%5d %5d %10.5f %10.5f\n", memi[0], memi[1], leni[0], leni[1] )
/dports/biology/wise/wise2.4.1/src/models/
H A Dmotifmatrix.c372 MotifConsMatrix * MotifConsMatrix_alloc_matrix(int leni,int lenj) in MotifConsMatrix_alloc_matrix() argument
393 for(i=0;i<leni;i++) in MotifConsMatrix_alloc_matrix()
398 for(i=0;i<leni;i++) { in MotifConsMatrix_alloc_matrix()
408 for(i=0;i<leni;i++) { in MotifConsMatrix_alloc_matrix()
414 out->leni=out->maxleni=leni; in MotifConsMatrix_alloc_matrix()
446 if( leni <= obj->maxleni && lenj <= obj->maxlenj) in expand_MotifConsMatrix()
450 if( obj->maxleni < leni ) { in expand_MotifConsMatrix()
453 obj->maxleni=obj->leni=leni; in expand_MotifConsMatrix()
458 for(i=0;i<obj->leni;i++) { in expand_MotifConsMatrix()
512 out->leni=out->maxleni=0; in MotifConsMatrix_alloc()
[all …]
H A Dmapstruct.c854 MappedCloneMatch * MappedCloneMatch_alloc_matrix(int leni,int lenj) in MappedCloneMatch_alloc_matrix() argument
875 for(i=0;i<leni;i++) in MappedCloneMatch_alloc_matrix()
880 for(i=0;i<leni;i++) { in MappedCloneMatch_alloc_matrix()
890 for(i=0;i<leni;i++) { in MappedCloneMatch_alloc_matrix()
896 out->leni=out->maxleni=leni; in MappedCloneMatch_alloc_matrix()
928 if( leni <= obj->maxleni && lenj <= obj->maxlenj) in expand_MappedCloneMatch()
932 if( obj->maxleni < leni ) { in expand_MappedCloneMatch()
935 obj->maxleni=obj->leni=leni; in expand_MappedCloneMatch()
940 for(i=0;i<obj->leni;i++) { in expand_MappedCloneMatch()
994 out->leni=out->maxleni=0; in MappedCloneMatch_alloc()
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/dports/multimedia/obs-studio/obs-studio-27.1.3/libobs/graphics/
H A Daxisang.c23 float len, leni; in axisang_from_quat() local
27 leni = 1.0f / sqrtf(len); in axisang_from_quat()
28 dst->x = q->x * leni; in axisang_from_quat()
29 dst->y = q->y * leni; in axisang_from_quat()
30 dst->z = q->z * leni; in axisang_from_quat()
/dports/biology/bbmap/bbmap/pytools/lib/
H A Drqc_fastq.py105 leni = 0 # total length of read 1
152 leni += aLen
162 …if leni > 0: ### Only set is_pe to true if leni > 0, which means the 1st read in the pair was fou…
168 if leni > 0 and readi > 0:
169 leni = leni / readi
173 return (leni, lenj, is_pe)
/dports/science/nwchem/nwchem-7b21660b82ebd85ef659f6fba7e1e73433b0bd0a/src/uccsdt/
H A Dgterm.F24 integer lenui,lenu,lenv,lenuv,lena,leni,lenai
148 leni = no_sym(symi,spini)
149 lenui = lenu * leni
150 lenai = lena * leni
161 if (odebug) call ma_print(dbl_mb(k_tmp),lenu,leni,'UI')
162 call dgemm('t','n',lena,leni,lenu,
166 if (odebug) call ma_print(dbl_mb(k_buf),lena,leni,'AI')
H A Dxterm.F22 integer lenik,lenjl,leni,lenk,leniu
271 leni = no_sym(symi,spini)
273 lenik = leni*lenk
274 leniu = leni*lenu
305 if (odebug) call ma_print(dbl_mb(k_buf),lenu,leni,'X(UI)')
307 call dgemm('t','n',leni,lenk,lenu,
310 $ 0.0d0,dbl_mb(k_tmp),leni)
312 if (odebug) call ma_print(dbl_mb(k_tmp),leni,lenk,'X(IK)')
317 $ dbl_mb(k_tmp),leni)
/dports/science/nwchem-data/nwchem-7.0.2-release/src/uccsdt/
H A Dgterm.F24 integer lenui,lenu,lenv,lenuv,lena,leni,lenai
148 leni = no_sym(symi,spini)
149 lenui = lenu * leni
150 lenai = lena * leni
161 if (odebug) call ma_print(dbl_mb(k_tmp),lenu,leni,'UI')
162 call dgemm('t','n',lena,leni,lenu,
166 if (odebug) call ma_print(dbl_mb(k_buf),lena,leni,'AI')
H A Dxterm.F22 integer lenik,lenjl,leni,lenk,leniu
271 leni = no_sym(symi,spini)
273 lenik = leni*lenk
274 leniu = leni*lenu
305 if (odebug) call ma_print(dbl_mb(k_buf),lenu,leni,'X(UI)')
307 call dgemm('t','n',leni,lenk,lenu,
310 $ 0.0d0,dbl_mb(k_tmp),leni)
312 if (odebug) call ma_print(dbl_mb(k_tmp),leni,lenk,'X(IK)')
317 $ dbl_mb(k_tmp),leni)
/dports/biology/wise/wise2.4.1/src/dyc/
H A Dprobal.dy48 expr(dfp,"int leni;");
60 expr(dfp,"leni = mat->leni;");
66 expr(dfp,"tot = leni * lenj;");
79 expr(dfp,"for(i=0;i<leni;i++)");
161 …expr(dfp,"if((mat->basematrix = BaseMatrix_alloc_matrix_and_specials(%d,(mat->leni + %d) * %d,%d,%…
163 … matrix for %s cannot be allocated, (asking for %d by %%d cells)\",mat->leni*%d);",gm->name,gm->…
176 expr(dfp,"for(i=(-%d);i<mat->leni;i++)",gm->window_i);
196 expr(dfp,"for(i=0;i<mat->leni;i++)");
/dports/security/aws-iam-authenticator/aws-iam-authenticator-0.5.2/vendor/gonum.org/v1/gonum/blas/gonum/
H A Dsgemm.go190 leni := blockSize
191 if i+leni > m {
192 leni = m - i
199 cSub := sliceView32(c, ldc, i, j, leni, lenj)
209 aSub = sliceView32(a, lda, k, i, lenk, leni)
211 aSub = sliceView32(a, lda, i, k, leni, lenk)
218 sgemmSerial(aTrans, bTrans, leni, lenj, lenk, aSub, lda, bSub, ldb, cSub, ldc, alpha)
H A Ddgemm.go186 leni := blockSize
187 if i+leni > m {
188 leni = m - i
195 cSub := sliceView64(c, ldc, i, j, leni, lenj)
205 aSub = sliceView64(a, lda, k, i, lenk, leni)
207 aSub = sliceView64(a, lda, i, k, leni, lenk)
214 dgemmSerial(aTrans, bTrans, leni, lenj, lenk, aSub, lda, bSub, ldb, cSub, ldc, alpha)
/dports/www/carbonapi/carbonapi-0.14.1/vendor/gonum.org/v1/gonum/blas/gonum/
H A Dsgemm.go190 leni := blockSize
191 if i+leni > m {
192 leni = m - i
199 cSub := sliceView32(c, ldc, i, j, leni, lenj)
209 aSub = sliceView32(a, lda, k, i, lenk, leni)
211 aSub = sliceView32(a, lda, i, k, leni, lenk)
218 sgemmSerial(aTrans, bTrans, leni, lenj, lenk, aSub, lda, bSub, ldb, cSub, ldc, alpha)
H A Ddgemm.go186 leni := blockSize
187 if i+leni > m {
188 leni = m - i
195 cSub := sliceView64(c, ldc, i, j, leni, lenj)
205 aSub = sliceView64(a, lda, k, i, lenk, leni)
207 aSub = sliceView64(a, lda, i, k, leni, lenk)
214 dgemmSerial(aTrans, bTrans, leni, lenj, lenk, aSub, lda, bSub, ldb, cSub, ldc, alpha)
/dports/www/grafana8/grafana-8.3.6/vendor/gonum.org/v1/gonum/blas/gonum/
H A Ddgemm.go179 leni := blockSize
180 if i+leni > m {
181 leni = m - i
188 cSub := sliceView64(c, ldc, i, j, leni, lenj)
198 aSub = sliceView64(a, lda, k, i, lenk, leni)
200 aSub = sliceView64(a, lda, i, k, leni, lenk)
207 dgemmSerial(aTrans, bTrans, leni, lenj, lenk, aSub, lda, bSub, ldb, cSub, ldc, alpha)
H A Dsgemm.go183 leni := blockSize
184 if i+leni > m {
185 leni = m - i
192 cSub := sliceView32(c, ldc, i, j, leni, lenj)
202 aSub = sliceView32(a, lda, k, i, lenk, leni)
204 aSub = sliceView32(a, lda, i, k, leni, lenk)
211 sgemmSerial(aTrans, bTrans, leni, lenj, lenk, aSub, lda, bSub, ldb, cSub, ldc, alpha)
/dports/sysutils/kubectl/kubernetes-1.22.2/vendor/gonum.org/v1/gonum/blas/gonum/
H A Ddgemm.go186 leni := blockSize
187 if i+leni > m {
188 leni = m - i
195 cSub := sliceView64(c, ldc, i, j, leni, lenj)
205 aSub = sliceView64(a, lda, k, i, lenk, leni)
207 aSub = sliceView64(a, lda, i, k, leni, lenk)
214 dgemmSerial(aTrans, bTrans, leni, lenj, lenk, aSub, lda, bSub, ldb, cSub, ldc, alpha)
H A Dsgemm.go190 leni := blockSize
191 if i+leni > m {
192 leni = m - i
199 cSub := sliceView32(c, ldc, i, j, leni, lenj)
209 aSub = sliceView32(a, lda, k, i, lenk, leni)
211 aSub = sliceView32(a, lda, i, k, leni, lenk)
218 sgemmSerial(aTrans, bTrans, leni, lenj, lenk, aSub, lda, bSub, ldb, cSub, ldc, alpha)
/dports/sysutils/istio/istio-1.6.7/vendor/github.com/openshift/api/vendor/gonum.org/v1/gonum/blas/gonum/
H A Dsgemm.go190 leni := blockSize
191 if i+leni > m {
192 leni = m - i
199 cSub := sliceView32(c, ldc, i, j, leni, lenj)
209 aSub = sliceView32(a, lda, k, i, lenk, leni)
211 aSub = sliceView32(a, lda, i, k, leni, lenk)
218 sgemmSerial(aTrans, bTrans, leni, lenj, lenk, aSub, lda, bSub, ldb, cSub, ldc, alpha)
H A Ddgemm.go186 leni := blockSize
187 if i+leni > m {
188 leni = m - i
195 cSub := sliceView64(c, ldc, i, j, leni, lenj)
205 aSub = sliceView64(a, lda, k, i, lenk, leni)
207 aSub = sliceView64(a, lda, i, k, leni, lenk)
214 dgemmSerial(aTrans, bTrans, leni, lenj, lenk, aSub, lda, bSub, ldb, cSub, ldc, alpha)
/dports/math/gap/gap-4.11.0/pkg/idrel-2.43/lib/
H A Didrels.gi113 leni := Length( s1 );
114 for t in [1..leni] do
126 leni := Length( s3 );
127 if ( leni > 0 ) then
333 leni := Length( idi );
334 if ( leni > 0 ) then
340 while ( k <= (lenj-leni+1) ) do
355 lenj := lenj - leni;
458 leni := Length( ident );
459 if ( leni > 0 ) then
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