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/dports/biology/stacks/stacks-2.4/src/
H A Dordered.h62 const LocTally *ltally; in init_sites() local
71 ltally = sorted_loci[pos]->s->meta_pop(); in init_sites()
74 if (ltally->nucs[k].allele_cnt == 2) in init_sites()
75 bps.push_back(ltally->nucs[k].bp); in init_sites()
410 const LocTally *ltally; in order() local
418 ltally = sorted_loci[pos]->s->meta_pop(); in order()
421 if (ltally->nucs[k].allele_cnt != 2) continue; in order()
423 assert(sites_key.count(ltally->nucs[k].bp) > 0); in order()
426 if (sites[sites_key[ltally->nucs[k].bp]] == NULL) { in order()
427 sites[sites_key[ltally->nucs[k].bp]] = &(ltally->nucs[k]); in order()