Searched refs:maxintronlen_ends (Results 1 – 3 of 3) sorted by relevance
353 static int maxintronlen_ends = 10000; /* Used in stage 3 */ variable5770 maxintronlen_ends = atoi(check_valid_int(optarg)); in parse_command_line()6084 case 'K': maxintronlen = maxintronlen_ends = atoi(check_valid_int(optarg)); break; in parse_command_line()7031 ngap,maxintronlen,maxintronlen_ends,minendexon,homopolymerp,gff3_fasta_annotation_type, in main()7426 ",maxintronlen_ends); in print_program_usage()
346 static int maxintronlen_ends; variable407 maxintronlen_ends = maxintronlen_ends_in; in Stage3_setup()4375 splice->genomejump > maxintronlen_ends) { in trim_end5_exons()4382 splice->genomejump,maxintronlen_ends)); in trim_end5_exons()4859 splice->genomejump > maxintronlen_ends) { in trim_end3_exons()4866 splice->genomejump,maxintronlen_ends)); in trim_end3_exons()
3959 * stage3.h: Added variable maxintronlen_ends3962 indel. Comparing end intron length with maxintronlen_ends.