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Searched refs:maxtotallen_bound (Results 1 – 2 of 2) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A Dstage1.c179 static Chrpos_T maxtotallen_bound; variable
188 maxtotallen_bound = maxtotallen_bound_in; in Stage1_setup()
197 static Chrpos_T maxtotallen_bound; variable
213 maxtotallen_bound = maxtotallen_bound_in; in Stage1_setup()
3595 } else if (maxtotallen > maxtotallen_bound) { in Stage1_compute()
3596 maxtotallen = maxtotallen_bound; in Stage1_compute()
3906 } else if (maxtotallen > maxtotallen_bound) { in Stage1_compute_nonstranded()
3907 maxtotallen = maxtotallen_bound; in Stage1_compute_nonstranded()
3961 } else if (maxtotallen > maxtotallen_bound) { in Stage1_compute_nonstranded()
3962 maxtotallen = maxtotallen_bound; in Stage1_compute_nonstranded()
H A Dgmap.c347 static int maxtotallen_bound = 2400000; variable
6088 case 'L': maxtotallen_bound = atoi(check_valid_int(optarg)); break; in parse_command_line()
6346 if (maxintronlen > maxtotallen_bound) { in parse_command_line()
6347 maxintronlen = maxtotallen_bound; in parse_command_line()
7002 Stage1_setup(index1part_aa,maxextension,maxtotallen_bound,circular_typeint); in main()
7008 Stage1_setup(index1part,maxextension,maxtotallen_bound,circular_typeint); in main()
7442 ",maxtotallen_bound); in print_program_usage()