Searched refs:md_lowercase_variant_p (Results 1 – 7 of 7) sorted by relevance
/dports/biology/gmap/gmap-2020-09-12/src/ |
H A D | mdprint.c | 42 int hardclip_low, int hardclip_high, bool md_lowercase_variant_p, bool lastp) { in print_md_string_plus() argument 82 } else if (md_lowercase_variant_p == false) { in print_md_string_plus() 167 int hardclip_low, int hardclip_high, bool md_lowercase_variant_p, bool lastp) { in print_md_string_minus() argument 210 } else if (md_lowercase_variant_p == false) { in print_md_string_minus() 293 int hardclip_low, int hardclip_high, bool md_lowercase_variant_p, in MD_print_substring() argument 303 hardclip_low,hardclip_high,md_lowercase_variant_p,lastp); in MD_print_substring() 310 hardclip_low,hardclip_high,md_lowercase_variant_p,lastp); in MD_print_substring() 320 hardclip_low,hardclip_high,md_lowercase_variant_p,lastp); in MD_print_substring() 329 hardclip_low,hardclip_high,md_lowercase_variant_p,lastp); in MD_print_substring() 341 hardclip_low,hardclip_high,md_lowercase_variant_p,lastp); in MD_print_substring()
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H A D | mdprint.h | 12 int hardclip_low, int hardclip_high, bool md_lowercase_variant_p,
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H A D | cigar.c | 54 static bool md_lowercase_variant_p; variable 68 md_lowercase_variant_p = md_lowercase_variant_p_in; in Cigar_setup() 370 } else if (md_lowercase_variant_p == false) { in print_extended_cigar() 487 } else if (md_lowercase_variant_p == false) { in print_extended_cigar() 1184 querylength,hardclip_low,hardclip_high,md_lowercase_variant_p, in print_substrings() 1224 querylength,hardclip_low,hardclip_high,md_lowercase_variant_p, in print_substrings() 1378 querylength,hardclip_low,hardclip_high,md_lowercase_variant_p, in print_substrings() 1436 querylength,hardclip_low,hardclip_high,md_lowercase_variant_p, in print_substrings() 1476 querylength,hardclip_low,hardclip_high,md_lowercase_variant_p, in print_substrings() 1823 querylength,hardclip_low,hardclip_high,md_lowercase_variant_p, in print_halfdonor() [all …]
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H A D | simplepair.c | 53 static bool md_lowercase_variant_p; variable 1186 if (md_lowercase_variant_p && this->cdna == this->genomealt) { in compute_md_string() 1284 if (md_lowercase_variant_p && this->cdna == this->genomealt) { in compute_md_string() 1846 md_lowercase_variant_p = md_lowercase_variant_p_in; in Simplepair_setup()
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H A D | gsnap.c | 496 static bool md_lowercase_variant_p = false; variable 2165 md_lowercase_variant_p = true; in parse_command_line() 3473 md_lowercase_variant_p,/*snps_p*/snps_iit ? true : false, in worker_setup() 3527 …gar_setup(genomecomp,sam_cigar_extended_p,hide_soft_clips_p,merge_samechr_p,md_lowercase_variant_p, in worker_setup()
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H A D | pair.c | 151 static bool md_lowercase_variant_p; variable 174 md_lowercase_variant_p = md_lowercase_variant_p_in; in Pair_setup() 6070 if (md_lowercase_variant_p && this->cdna == this->genomealt) { in compute_md_string() 6168 if (md_lowercase_variant_p && this->cdna == this->genomealt) { in compute_md_string()
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H A D | gmap.c | 442 static bool md_lowercase_variant_p = false; variable 5961 md_lowercase_variant_p = true; in parse_command_line() 7022 md_lowercase_variant_p,/*snps_p*/genomecomp_alt ? true : false, in main()
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