Searched refs:min_identity (Results 1 – 9 of 9) sorted by relevance
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/sequence/demo/ |
| H A D | adapter_search.cpp | 65 double min_identity);
175 double min_identity) in s_MaskQuery() argument
188 if(coverage >= min_coverage && identity >= min_identity) { in s_MaskQuery()
216 double min_identity = args["min_identity"].AsDouble(); in x_MaskAdaptersSingle() local
227 min_identity); in x_MaskAdaptersSingle()
269 double min_identity = args["min_identity"].AsDouble(); in x_MaskAdaptersPaired() local
287 min_identity); in x_MaskAdaptersPaired()
294 min_identity); in x_MaskAdaptersPaired()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/igblast/ |
| H A D | igblastn_app.cpp | 516 info->min_identity = clone_info.identity; in Main()
527 if (info->min_identity < iter2->second->min_identity) { in Main()
528 iter2->second->min_identity = info->min_identity; in Main()
894 << iter2->second->min_identity*100<<"\t" in Run()
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| H A D | igblast_types.hpp | 44 double min_identity; member
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| /dports/biology/gmap/gmap-2020-09-12/src/ |
| H A D | stage3.h | 177 Stage3_passes_filter (T this, double min_trimmed_coverage, double min_identity);
179 Stage3_passes_filter_chimera (Chimera_T chimera, double min_trimmed_coverage, double min_identity);
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| H A D | gmap.c | 459 static double min_identity = 0.0; variable
1690 if (Stage3_passes_filter(stage3,min_trimmed_coverage,min_identity) == false) { in stage3list_filter_and_sort()
1703 if (Stage3_passes_filter(array[i],min_trimmed_coverage,min_identity) == false) { in stage3list_filter_and_sort()
1712 } else if (Stage3_passes_filter_chimera(*chimera,min_trimmed_coverage,min_identity) == true) { in stage3list_filter_and_sort()
1721 } else if (Stage3_passes_filter(array[i],min_trimmed_coverage,min_identity) == false) { in stage3list_filter_and_sort()
1739 } else if (Stage3_passes_filter(array[i],min_trimmed_coverage,min_identity) == false) { in stage3list_filter_and_sort()
5857 min_identity = check_valid_float(optarg,long_name); in parse_command_line()
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| H A D | stage3.c | 928 Stage3_passes_filter (T this, double min_trimmed_coverage, double min_identity) { in Stage3_passes_filter() argument
936 } else if ((double) this->matches/(double) den < min_identity) { in Stage3_passes_filter()
944 Stage3_passes_filter_chimera (Chimera_T chimera, double min_trimmed_coverage, double min_identity) { in Stage3_passes_filter_chimera() argument
957 } else if ((double) (from->matches + to->matches)/(double) den < min_identity) { in Stage3_passes_filter_chimera()
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| /dports/science/lammps/lammps-stable_29Sep2021/lib/kokkos/core/unit_test/ |
| H A D | TestMDRange.hpp | 1022 double min_identity = Kokkos::reduction_identity<double>::min(); in test_reduce3() local
1023 ASSERT_EQ(min, min_identity); in test_reduce3()
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| /dports/devel/kokkos/kokkos-3.4.01/core/unit_test/ |
| H A D | TestMDRange.hpp | 1022 double min_identity = Kokkos::reduction_identity<double>::min(); in test_reduce3() local
1023 ASSERT_EQ(min, min_identity); in test_reduce3()
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| /dports/science/sparta/sparta-20Oct2021/lib/kokkos/core/unit_test/ |
| H A D | TestMDRange.hpp | 1022 double min_identity = Kokkos::reduction_identity<double>::min(); in test_reduce3() local
1023 ASSERT_EQ(min, min_identity); in test_reduce3()
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