Searched refs:min_trimmed_coverage (Results 1 – 3 of 3) sorted by relevance
| /dports/biology/gmap/gmap-2020-09-12/src/ |
| H A D | stage3.h | 177 Stage3_passes_filter (T this, double min_trimmed_coverage, double min_identity);
179 Stage3_passes_filter_chimera (Chimera_T chimera, double min_trimmed_coverage, double min_identity);
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| H A D | gmap.c | 458 static double min_trimmed_coverage = 0.0; variable
1690 if (Stage3_passes_filter(stage3,min_trimmed_coverage,min_identity) == false) { in stage3list_filter_and_sort()
1703 if (Stage3_passes_filter(array[i],min_trimmed_coverage,min_identity) == false) { in stage3list_filter_and_sort()
1712 } else if (Stage3_passes_filter_chimera(*chimera,min_trimmed_coverage,min_identity) == true) { in stage3list_filter_and_sort()
1721 } else if (Stage3_passes_filter(array[i],min_trimmed_coverage,min_identity) == false) { in stage3list_filter_and_sort()
1739 } else if (Stage3_passes_filter(array[i],min_trimmed_coverage,min_identity) == false) { in stage3list_filter_and_sort()
5855 min_trimmed_coverage = check_valid_float(optarg,long_name); in parse_command_line()
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| H A D | stage3.c | 928 Stage3_passes_filter (T this, double min_trimmed_coverage, double min_identity) { in Stage3_passes_filter() argument
931 if (this->trimmed_coverage < min_trimmed_coverage) { in Stage3_passes_filter()
944 Stage3_passes_filter_chimera (Chimera_T chimera, double min_trimmed_coverage, double min_identity) { in Stage3_passes_filter_chimera() argument
951 if (from->trimmed_coverage + to->trimmed_coverage < min_trimmed_coverage) { in Stage3_passes_filter_chimera()
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