Searched refs:mismatch_positions_alloc_3 (Results 1 – 6 of 6) sorted by relevance
/dports/biology/gmap/gmap-2020-09-12/src/ |
H A D | concordance.c | 185 mismatch_positions_alloc_5,mismatch_positions_alloc_3, 287 mismatch_positions_alloc_5,mismatch_positions_alloc_3, 395 mismatch_positions_alloc_5,mismatch_positions_alloc_3, 510 mismatch_positions_alloc_5,mismatch_positions_alloc_3, in do_genome_plus() 641 mismatch_positions_alloc_5,mismatch_positions_alloc_3, in do_genome_minus() 807 mismatch_positions_alloc_5,mismatch_positions_alloc_3, in Concordance_pair_up_genome() 842 mismatch_positions_alloc_5,mismatch_positions_alloc_3, in Concordance_pair_up_genome() 879 mismatch_positions_alloc_5,mismatch_positions_alloc_3, in Concordance_pair_up_genome() 915 mismatch_positions_alloc_5,mismatch_positions_alloc_3, in Concordance_pair_up_genome() 1642 mismatch_positions_alloc_5,mismatch_positions_alloc_3, in Concordance_pair_up_distant() [all …]
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H A D | concordance.h | 32 int *mismatch_positions_alloc_5, int *mismatch_positions_alloc_3, 50 int *mismatch_positions_alloc_5, int *mismatch_positions_alloc_3,
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H A D | stage1hr.c | 1907 queryuc_ptr_3,queryrc3,querylength3,mismatch_positions_alloc_3, in paired_read_segment_search() 2049 mismatch_positions_alloc_3,this3->positions_alloc, in paired_read_segment_search() 2360 mismatch_positions_alloc_5,mismatch_positions_alloc_3, in paired_read() 2620 mismatch_positions_alloc_5,mismatch_positions_alloc_3, in consolidate_paired_results() 2801 int *mismatch_positions_alloc_5, *mismatch_positions_alloc_3; in Stage1_paired_read() local 2900 mismatch_positions_alloc_5,mismatch_positions_alloc_3, in Stage1_paired_read() 2927 mismatch_positions_alloc_5,mismatch_positions_alloc_3, in Stage1_paired_read() 2940 mismatch_positions_alloc_5,mismatch_positions_alloc_3, in Stage1_paired_read() 2954 mismatch_positions_alloc_5,mismatch_positions_alloc_3, in Stage1_paired_read() 2988 mismatch_positions_alloc_5,mismatch_positions_alloc_3, in Stage1_paired_read() [all …]
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H A D | stage3hr.h | 439 int *mismatch_positions_alloc_5, int *mismatch_positions_alloc_3,
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H A D | stage3hr.c | 11308 int *mismatch_positions_alloc_5, int *mismatch_positions_alloc_3, in Stage3pair_new() argument 11502 resolve_ambiguity_3(hit3,mismatch_positions_alloc_3,query3_compress_fwd,alts_resolve_3); in Stage3pair_new() 11636 resolve_ambiguity_3(hit3,mismatch_positions_alloc_3,query3_compress_rev,alts_resolve_3); in Stage3pair_new()
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H A D | kmer-search.c | 4694 int *mismatch_positions_alloc_5, int *mismatch_positions_alloc_3,
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