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Searched refs:mismatch_positions_alloc_3 (Results 1 – 6 of 6) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A Dconcordance.c185 mismatch_positions_alloc_5,mismatch_positions_alloc_3,
287 mismatch_positions_alloc_5,mismatch_positions_alloc_3,
395 mismatch_positions_alloc_5,mismatch_positions_alloc_3,
510 mismatch_positions_alloc_5,mismatch_positions_alloc_3, in do_genome_plus()
641 mismatch_positions_alloc_5,mismatch_positions_alloc_3, in do_genome_minus()
807 mismatch_positions_alloc_5,mismatch_positions_alloc_3, in Concordance_pair_up_genome()
842 mismatch_positions_alloc_5,mismatch_positions_alloc_3, in Concordance_pair_up_genome()
879 mismatch_positions_alloc_5,mismatch_positions_alloc_3, in Concordance_pair_up_genome()
915 mismatch_positions_alloc_5,mismatch_positions_alloc_3, in Concordance_pair_up_genome()
1642 mismatch_positions_alloc_5,mismatch_positions_alloc_3, in Concordance_pair_up_distant()
[all …]
H A Dconcordance.h32 int *mismatch_positions_alloc_5, int *mismatch_positions_alloc_3,
50 int *mismatch_positions_alloc_5, int *mismatch_positions_alloc_3,
H A Dstage1hr.c1907 queryuc_ptr_3,queryrc3,querylength3,mismatch_positions_alloc_3, in paired_read_segment_search()
2049 mismatch_positions_alloc_3,this3->positions_alloc, in paired_read_segment_search()
2360 mismatch_positions_alloc_5,mismatch_positions_alloc_3, in paired_read()
2620 mismatch_positions_alloc_5,mismatch_positions_alloc_3, in consolidate_paired_results()
2801 int *mismatch_positions_alloc_5, *mismatch_positions_alloc_3; in Stage1_paired_read() local
2900 mismatch_positions_alloc_5,mismatch_positions_alloc_3, in Stage1_paired_read()
2927 mismatch_positions_alloc_5,mismatch_positions_alloc_3, in Stage1_paired_read()
2940 mismatch_positions_alloc_5,mismatch_positions_alloc_3, in Stage1_paired_read()
2954 mismatch_positions_alloc_5,mismatch_positions_alloc_3, in Stage1_paired_read()
2988 mismatch_positions_alloc_5,mismatch_positions_alloc_3, in Stage1_paired_read()
[all …]
H A Dstage3hr.h439 int *mismatch_positions_alloc_5, int *mismatch_positions_alloc_3,
H A Dstage3hr.c11308 int *mismatch_positions_alloc_5, int *mismatch_positions_alloc_3, in Stage3pair_new() argument
11502 resolve_ambiguity_3(hit3,mismatch_positions_alloc_3,query3_compress_fwd,alts_resolve_3); in Stage3pair_new()
11636 resolve_ambiguity_3(hit3,mismatch_positions_alloc_3,query3_compress_rev,alts_resolve_3); in Stage3pair_new()
H A Dkmer-search.c4694 int *mismatch_positions_alloc_5, int *mismatch_positions_alloc_3,