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/dports/devel/py-testtools/testtools-2.5.0/testtools/matchers/
H A D_dict.py20 def LabelledMismatches(mismatches, details=None): argument
42 mismatches = {}
54 self.mismatches = mismatches
69 mismatches = filter_values(bool, data)
70 if mismatches:
71 return result_mismatch(mismatches)
94 mismatches = {}
98 mismatches[key] = mismatch
99 return mismatches
103 if mismatches:
[all …]
H A D_higherorder.py76 def __init__(self, mismatches, wrap=True): argument
77 self.mismatches = mismatches
84 for mismatch in self.mismatches:
231 mismatches = []
235 mismatches.append(mismatch)
236 if mismatches:
237 return MismatchesAll(mismatches)
250 mismatches = []
254 mismatches.append(mismatch)
257 return MismatchesAll(mismatches)
/dports/databases/mongodb36/mongodb-src-r3.6.23/src/third_party/wiredtiger/test/3rdparty/testtools-0.9.34/testtools/matchers/
H A D_dict.py20 def LabelledMismatches(mismatches, details=None): argument
42 mismatches = {}
54 self.mismatches = mismatches
69 mismatches = filter_values(bool, data)
70 if mismatches:
71 return result_mismatch(mismatches)
94 mismatches = {}
98 mismatches[key] = mismatch
99 return mismatches
103 if mismatches:
[all …]
H A D_higherorder.py76 def __init__(self, mismatches, wrap=True): argument
77 self.mismatches = mismatches
84 for mismatch in self.mismatches:
231 mismatches = []
235 mismatches.append(mismatch)
236 if mismatches:
237 return MismatchesAll(mismatches)
250 mismatches = []
254 mismatches.append(mismatch)
257 return MismatchesAll(mismatches)
/dports/biology/vcftools/vcftools-0.1.16/examples/
H A Dcmp-test.out11 SN Number of REF mismatches: 0
12 SN Number of ALT mismatches: 1
47 #AF 6 .. Hom(RR) mismatches
48 #AF 7 .. Het(RA) mismatches
49 #AF 8 .. Hom(AA) mismatches
50 #AF 9 .. Het(AA) mismatches
61 #DP 5 .. RR -> RA mismatches
62 #DP 6 .. RR -> AA mismatches
63 #DP 7 .. RA -> RR mismatches
64 #DP 8 .. RA -> AA mismatches
[all …]
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/alnmgr/
H A Dscore_builder_base.cpp652 int mismatches = 0; in GetPercentIdentity() local
666 int mismatches = 0; in GetPercentIdentity() local
681 int mismatches = 0; in GetPercentIdentity() local
724 int mismatches = 0; in GetIdentityCount() local
733 int mismatches = 0; in GetMismatchCount() local
735 return mismatches; in GetMismatchCount()
743 mismatches = 0; in GetMismatchCount()
766 return mismatches; in GetMismatchCount()
775 mismatches = 0; in GetMismatchCount()
797 return mismatches; in GetMismatchCount()
[all …]
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/alnmgr/
H A Dscore_builder_base.cpp652 int mismatches = 0; in GetPercentIdentity() local
666 int mismatches = 0; in GetPercentIdentity() local
681 int mismatches = 0; in GetPercentIdentity() local
724 int mismatches = 0; in GetIdentityCount() local
733 int mismatches = 0; in GetMismatchCount() local
735 return mismatches; in GetMismatchCount()
743 mismatches = 0; in GetMismatchCount()
766 return mismatches; in GetMismatchCount()
775 mismatches = 0; in GetMismatchCount()
797 return mismatches; in GetMismatchCount()
[all …]
/dports/net/freeswitch/freeswitch-1.10.3.-release/libs/spandsp/tests/
H A Dgsm0610_tests.c300 int mismatches; in perform_linear_test() local
316 for (i = 0, mismatches = 0; i < xxx; i++) in perform_linear_test()
321 mismatches++; in perform_linear_test()
325 if (mismatches) in perform_linear_test()
345 mismatches++; in perform_linear_test()
348 if (mismatches) in perform_linear_test()
365 int mismatches; in perform_law_test() local
399 mismatches++; in perform_law_test()
402 if (mismatches) in perform_law_test()
433 mismatches++; in perform_law_test()
[all …]
/dports/comms/spandsp/spandsp-284fe91/tests/
H A Dgsm0610_tests.c300 int mismatches; in perform_linear_test() local
316 for (i = 0, mismatches = 0; i < xxx; i++) in perform_linear_test()
321 mismatches++; in perform_linear_test()
325 if (mismatches) in perform_linear_test()
345 mismatches++; in perform_linear_test()
348 if (mismatches) in perform_linear_test()
365 int mismatches; in perform_law_test() local
399 mismatches++; in perform_law_test()
402 if (mismatches) in perform_law_test()
433 mismatches++; in perform_law_test()
[all …]
/dports/net/iaxmodem/iaxmodem-1.2.0/lib/spandsp/tests/
H A Dgsm0610_tests.c304 int mismatches; in perform_linear_test() local
320 for (i = 0, mismatches = 0; i < xxx; i++) in perform_linear_test()
325 mismatches++; in perform_linear_test()
329 if (mismatches) in perform_linear_test()
349 mismatches++; in perform_linear_test()
352 if (mismatches) in perform_linear_test()
369 int mismatches; in perform_law_test() local
403 mismatches++; in perform_law_test()
406 if (mismatches) in perform_law_test()
437 mismatches++; in perform_law_test()
[all …]
/dports/devel/py-pyparsing2/pyparsing-2.4.7/examples/
H A Dpartial_gene_match.py50 mismatches = []
55 mismatches.append(seqloc)
56 if len(mismatches) > self.maxMismatches:
70 return loc, (instring[start:loc],mismatches)
78 matched, mismatches = t[0] variable
81 if mismatches:
82 print(" ", ''.join(' ' if i not in mismatches else '*'
/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/Search/HSP/
H A DPSLHSP.pm97 $mismatches) = $self->_rearrange([qw(QUERY_GAPBLOCKS
103 $self->mismatches($mismatches) if defined $mismatches;
146 sub mismatches{ subroutine
/dports/www/typo3-9/typo3_src-9.5.31/typo3/sysext/install/Classes/SystemEnvironment/ServerResponse/
H A DFileDeclaration.php123 $mismatches = [];
127 $mismatches[] = $result;
129 return $mismatches;
135 $mismatches[] = new StatusMessage(
142 $mismatches[] = new StatusMessage(
150 $mismatches[] = new StatusMessage(
158 $mismatches[] = new StatusMessage(
164 return $mismatches;
/dports/www/typo3-10/typo3_src-10.4.25/typo3/sysext/install/Classes/SystemEnvironment/ServerResponse/
H A DFileDeclaration.php123 $mismatches = [];
127 $mismatches[] = $result;
129 return $mismatches;
135 $mismatches[] = new StatusMessage(
142 $mismatches[] = new StatusMessage(
150 $mismatches[] = new StatusMessage(
158 $mismatches[] = new StatusMessage(
164 return $mismatches;
/dports/www/typo3-11/typo3_src-11.5.7/typo3/sysext/install/Classes/SystemEnvironment/ServerResponse/
H A DFileDeclaration.php123 $mismatches = [];
127 $mismatches[] = $result;
129 return $mismatches;
135 $mismatches[] = new StatusMessage(
142 $mismatches[] = new StatusMessage(
150 $mismatches[] = new StatusMessage(
158 $mismatches[] = new StatusMessage(
164 return $mismatches;
/dports/security/s2n/s2n-tls-1.1.2/tests/sidetrail/working/patches/
H A Dcbc.patch21 + int mismatches = old_mismatches;
26 + mismatches |= (decrypted->data[j] ^ padding_length) & mask;
28 + return mismatches;
70 - return 0 - mismatches;
73 + // return 0 - mismatches;
82 - mismatches |= (decrypted->data[j] ^ padding_length) & mask;
84 + mismatches = double_loop(mismatches, decrypted, check, cutoff, padding_length);
87 + // mismatches |= (decrypted->data[j] ^ padding_length) & mask;
90 S2N_ERROR_IF(mismatches, S2N_ERR_CBC_VERIFY);
/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/spark/sv/discovery/alignment/
H A DAlignmentInterval.java73 public final int mismatches; field in AlignmentInterval
160 this.mismatches = mismatches; in AlignmentInterval()
194 if (mismatches == NO_NM) { in appendSATagString()
197 builder.append(mismatches); in appendSATagString()
296 this.mismatches = alignment.getNMismatches(); in AlignmentInterval()
322 this.mismatches = mismatches; in AlignmentInterval()
396 mismatches = input.readInt(); in AlignmentInterval()
410 output.writeInt(mismatches); in serialize()
465 if (mismatches != that.mismatches) return false; in equals()
480 result = 31 * result + mismatches; in hashCode()
[all …]
/dports/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/
H A Dpileup_counters.c180 uint32_t mismatches[ 4 ]; member
198 counters->mismatches[ i ] = 0; in clear_counters()
225 case 'A' : ( counters->mismatches[ 0 ] )++; break; in walk_counter_state()
281 rc = KOutMsg( "\t%u-A", counters->mismatches[ 0 ] ); in print_counter_line()
284 rc = KOutMsg( "\t%u-C", counters->mismatches[ 1 ] ); in print_counter_line()
287 rc = KOutMsg( "\t%u-G", counters->mismatches[ 2 ] ); in print_counter_line()
290 rc = KOutMsg( "\t%u-T", counters->mismatches[ 3 ] ); in print_counter_line()
382 uint32_t total_mismatches = counters->mismatches[ 0 ] + in print_mismatches_line()
383 counters->mismatches[ 1 ] + in print_mismatches_line()
384 counters->mismatches[ 2 ] + in print_mismatches_line()
[all …]
/dports/devel/py-testtools/testtools-2.5.0/testtools/tests/twistedsupport/
H A Dtest_matchers.py25 def mismatches(description, details=None): function
68 mismatch, mismatches(Equals(
80 mismatch, mismatches(Equals(
128 mismatches(Equals(mismatch.describe()),
137 mismatches(
149 mismatches(
180 mismatches(Equals(mismatch.describe()),
190 mismatches(Equals(
200 mismatches(Equals(
/dports/biology/fastx-toolkit/fastx_toolkit-0.0.14/src/fastx_clipper/
H A Dfastx_clipper.cpp162 int mismatches = alignment_results.mismatches ; in adapter_cutoff_index()
167 mismatches += alignment_results.target_start ; in adapter_cutoff_index()
177 mismatches += missing_from_end ; in adapter_cutoff_index()
183 << " mismatches = " << mismatches in adapter_cutoff_index()
186 if (mismatches > max_mismatches) in adapter_cutoff_index()
194 alignment_results.mismatches + in adapter_cutoff_index()
210 alignment_results.mismatches == 0 ) { in adapter_cutoff_index()
/dports/biology/emboss/EMBOSS-6.6.0/emboss/
H A Dtrimest.c30 ajint minlength, ajint mismatches);
53 ajint mismatches; in main() local
63 mismatches = ajAcdGetInt("mismatches"); in main()
78 tail5 = trimest_get_tail(seq, 5, minlength, mismatches); in main()
79 tail3 = trimest_get_tail(seq, 3, minlength, mismatches); in main()
155 ajint minlength, ajint mismatches) in trimest_get_tail() argument
216 if(mismatchcount > mismatches) in trimest_get_tail()
/dports/biology/emboss/EMBOSS-6.6.0/doc/programs/master/emboss/apps/inc/
H A Dprimersearch.output22 CACACATGCACATGCAC hits forward strand at 27 with 0 mismatches
23 AGTGACACCAGCAGGG hits reverse strand at [103] with 0 mismatches
48 CACACATGCACATGCAC hits forward strand at 49 with 2 mismatches
49 AGTGACACCAGCAGGG hits reverse strand at [103] with 0 mismatches
54 CACACATGCACATGCAC hits forward strand at 27 with 0 mismatches
55 AGTGACACCAGCAGGG hits reverse strand at [103] with 0 mismatches
H A Dvectorstrip.output13 From 67 to 83 with 0 mismatches
15 From 205 to 219 with 0 mismatches
37 From 43 to 61 with 0 mismatches
39 From 183 to 199 with 0 mismatches
56 From 40 to 58 with 0 mismatches
58 From 180 to 196 with 0 mismatches
/dports/lang/rust/rustc-1.58.1-src/src/test/ui/array-slice-vec/
H A Dslice-pat-type-mismatches.stderr2 --> $DIR/slice-pat-type-mismatches.rs:26:11
8 --> $DIR/slice-pat-type-mismatches.rs:3:9
14 --> $DIR/slice-pat-type-mismatches.rs:18:9
20 --> $DIR/slice-pat-type-mismatches.rs:23:9
26 --> $DIR/slice-pat-type-mismatches.rs:34:9
/dports/biology/bamutil/bamUtil-1.0.15/test/expected/
H A DseqBases.sam12 …S3M2D3M1I1M3N1M1P1M3S = 10011 0 AATAACTAGAAAGGG I000I0III??IIII XN:Z:1 mismatches, 1 clipped from …
13 …S3M2D3M1I1M3N1M1P1M3S = 10011 0 AATAACTAGGAAGGG I000I0III??IIII XN:Z:2 mismatches, 2 clipped from …
14 …H2S3M2D3M1I1M3N1M1P1M3S = 10011 0 AATTTCTAGATAGGG I00?00III??IIII XN:Z:mismatches from front so fi…
15 …H2S3M2D3M1I1M3N1M1P1M3S = 10011 0 AATTTCATGATAGGG I00?00III??IIII XN:Z:mismatches from front so fi…
16 …S3M2D3M1I1M3N1M1P1M3S = 10011 0 AATATCAAGTTAGGG I00?00III??IIII XN:Z:3 mismatches, no clips, but f…
17 …13 0 3H2S3M2D3M1I1M3N1M1P1M3S = 10011 0 AATATCAAGTTAGGG I000000II!?IIII XN:Z:3 mismatches, no clips

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