Searched refs:msa_master_idx (Results 1 – 8 of 8) sorted by relevance
77 unsigned int msa_master_idx /* = 0 */) in CPsiBlastInputClustalW() argument91 if ( !m_Query || msa_master_idx != 0) { in CPsiBlastInputClustalW()92 x_ExtractQueryFromMsa(msa_master_idx); in CPsiBlastInputClustalW()274 CPsiBlastInputClustalW::x_ExtractQueryFromMsa(unsigned int msa_master_idx/*=0*/) in x_ExtractQueryFromMsa() argument276 if (msa_master_idx >= m_AsciiMsa.size()) { in x_ExtractQueryFromMsa()283 const string& kQuery = m_AsciiMsa.at(msa_master_idx); in x_ExtractQueryFromMsa()
80 unsigned int msa_master_idx = 0);170 void x_ExtractQueryFromMsa(unsigned int msa_master_idx = 0);
1219 unsigned int msa_master_idx, in x_CreatePssmFromMsa() argument1232 msa_master_idx); in x_CreatePssmFromMsa()1285 unsigned int msa_master_idx = 0; in ExtractAlgorithmOptions() local1287 msa_master_idx = args[kArgMSAMasterIndex].AsInteger() - 1; in ExtractAlgorithmOptions()1290 msa_master_idx, in ExtractAlgorithmOptions()
647 bool save_ascii_pssm, unsigned int msa_master_idx,