Searched refs:nconcordant (Results 1 – 3 of 3) sorted by relevance
135 int nconcordant = 0;205 nconcordant++;218 return nconcordant;237 int nconcordant = 0;304 nconcordant++;317 return nconcordant;376 if (nconcordant == 0) {537 nconcordant++; in do_genome_plus()551 return nconcordant; in do_genome_plus()667 nconcordant++; in do_genome_minus()[all …]
827 int nconcordant; in disambiguate_paths() local862 nconcordant = 0; in disambiguate_paths()865 nconcordant += 1; in disambiguate_paths()869 if (nconcordant == 0) { in disambiguate_paths()878 l = i + nconcordant; in disambiguate_paths()879 while (k < i + nconcordant && l < j) { in disambiguate_paths()886 if (k < i + nconcordant && l < j) { in disambiguate_paths()900 for (k = i + nconcordant; k < j; k++) { in disambiguate_paths()908 if (nconcordant == 1) { in disambiguate_paths()951 for (k = i; k < i + nconcordant; k++) { in disambiguate_paths()[all …]
3080 pairsearch/halfmapping if nconcordant > 03716 * stage3hr.c: Restored setting of abort_pairing_p when nconcordant exceeds8230 nconcordant == 0.9612 nconcordant.9615 nconcordant9623 * stage1hr.c: Recording GMAP pairsearch successes as nconcordant10508 updating nconcordant for GMAP pair revisions12971 either nconcordant or nsalvage. Distant splicing done if nconcordant is12972 0. Terminals done if both nconcordant and nsalvage are 0.16409 * stage1hr.c: Removed requirement for nconcordant == 0 in deciding to[all …]