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Searched refs:new_packsize (Results 1 – 5 of 5) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A Datoiindex.c319 int new_packsize; in index_offsets_ag_using_bitpack() local
338 if ((new_packsize = Bitpack64_access_new_packsize(reduced,/*old_packsize*/(int) packsizes[bmer], in index_offsets_ag_using_bitpack()
340 bitpacks[bmer] = Bitpack64_realloc_multiple((int) packsizes[bmer],new_packsize,bitpacks[bmer]); in index_offsets_ag_using_bitpack()
341 packsizes[bmer] = (char) new_packsize; in index_offsets_ag_using_bitpack()
368 int new_packsize; in index_offsets_tc_using_bitpack() local
387 if ((new_packsize = Bitpack64_access_new_packsize(reduced,/*old_packsize*/(int) packsizes[bmer], in index_offsets_tc_using_bitpack()
389 bitpacks[bmer] = Bitpack64_realloc_multiple((int) packsizes[bmer],new_packsize,bitpacks[bmer]); in index_offsets_tc_using_bitpack()
390 packsizes[bmer] = (char) new_packsize; in index_offsets_tc_using_bitpack()
H A Dbitpack64-incr.h28 Bitpack64_realloc_multiple (int old_packsize, int new_packsize, UINT4 *bitpack);
H A Dcmetindex.c319 int new_packsize; in index_offsets_ct_using_bitpack() local
338 if ((new_packsize = Bitpack64_access_new_packsize(reduced,/*old_packsize*/(int) packsizes[bmer], in index_offsets_ct_using_bitpack()
340 bitpacks[bmer] = Bitpack64_realloc_multiple((int) packsizes[bmer],new_packsize,bitpacks[bmer]); in index_offsets_ct_using_bitpack()
341 packsizes[bmer] = (char) new_packsize; in index_offsets_ct_using_bitpack()
368 int new_packsize; in index_offsets_ga_using_bitpack() local
387 if ((new_packsize = Bitpack64_access_new_packsize(reduced,/*old_packsize*/(int) packsizes[bmer], in index_offsets_ga_using_bitpack()
389 bitpacks[bmer] = Bitpack64_realloc_multiple((int) packsizes[bmer],new_packsize,bitpacks[bmer]); in index_offsets_ga_using_bitpack()
390 packsizes[bmer] = (char) new_packsize; in index_offsets_ga_using_bitpack()
H A Dbitpack64-access.c2204 int new_packsize; in Bitpack64_access_new_packsize() local
2224 new_packsize = 0; in Bitpack64_access_new_packsize()
2228 new_packsize = 32 - firstbit; in Bitpack64_access_new_packsize()
2231 new_packsize = msb + 1; in Bitpack64_access_new_packsize()
2234 new_packsize = 32 - firstbit; in Bitpack64_access_new_packsize()
2238 new_packsize = (new_packsize + 1) & ~1; /* Converts packsizes to the next multiple of 2 */ in Bitpack64_access_new_packsize()
2239 if (new_packsize > old_packsize) { in Bitpack64_access_new_packsize()
2240 return new_packsize; in Bitpack64_access_new_packsize()
H A Dbitpack64-incr.c10087 Bitpack64_realloc_multiple (int old_packsize, int new_packsize, UINT4 *bitpack) { in Bitpack64_realloc_multiple() argument
10094 for (packsize = old_packsize; packsize < new_packsize; packsize += 2) { in Bitpack64_realloc_multiple()