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/dports/textproc/senna/senna-1.1.5/bindings/ruby/test/advanced-api-test/
H A Dtest_index_advanced.rb102 assert_equal(2, rcs.nhits)
106 assert_equal(2, rcs.nhits)
110 assert_equal(1, rcs.nhits)
140 assert_equal(3, rcs.nhits)
147 assert_equal(1, rcs.nhits)
155 assert_equal(1, rcs.nhits)
164 assert_equal(2, rcs.nhits)
174 assert_equal(1, rcs.nhits)
176 assert_equal(0, rcs.nhits)
179 assert_equal(1, rcs.nhits)
[all …]
H A Dtest_query_advanced.rb60 assert_equal(2, rc1.nhits)
62 assert_equal(2, rc2.nhits)
64 assert_equal(2, rc3.nhits)
69 assert_equal(3, rc.nhits)
74 assert_equal(1, rc.nhits)
78 assert_equal(1, rc.nhits)
82 assert_equal(2, rc.nhits)
92 assert_equal(3, rc.nhits)
98 assert_equal(1, rc.nhits)
103 assert_equal(1, rc.nhits)
[all …]
H A Dtest_records_advanced.rb35 assert_equal(3, rcsa.nhits)
42 assert_equal(1, rcsb.nhits)
50 assert_equal(1, rcsa.nhits)
58 assert_equal(1, rcsa.nhits)
60 assert_equal(1, rcsb.nhits)
106 assert_equal(4, rcs.nhits)
108 assert_equal(3, rcs.nhits)
116 assert_equal(2, rcs.nhits)
/dports/textproc/senna/senna-1.1.5/bindings/ruby/test/basic-api-test/
H A Dtest_index_update.rb26 assert_equal(1, rcs.nhits)
36 assert_equal(1, rcs.nhits)
45 assert_equal(MANY, rcs.nhits)
69 assert_equal(1, rcs.nhits)
74 assert_equal(1, rcs.nhits)
81 assert_equal(1, rcs.nhits)
86 assert_equal(1, rcs.nhits)
93 assert_equal(1, rcs.nhits)
98 assert_equal(1, rcs.nhits)
105 assert_equal(1, rcs.nhits)
[all …]
/dports/biology/gmap/gmap-2020-09-12/src/
H A Dladder.c74 int *nhits; member
92 int nhits, i; in Ladder_check() local
118 nhits = 0; in Ladder_check()
122 nhits++; in Ladder_check()
125 assert(nhits == this->nhits[score]); in Ladder_check()
225 this->nhits[score] = *nhits; in Ladder_hits_for_score()
683 dest->nhits[score] += source->nhits[score]; in Ladder_merge()
698 nhits[score] = dest->nhits[score]; in Ladder_merge()
702 nhits[score] = dest->nhits[score] + source->nhits[score]; in Ladder_merge()
727 if ((nhits[score] = source->nhits[score]) > 0) { in Ladder_merge()
[all …]
/dports/java/openjdk11/jdk11u-jdk-11.0.13-8-1/test/jdk/com/sun/jdi/
H A DMultiBreakpointsTest.java71 int nhits; in main() local
83 nhits = Integer.parseInt(nStr); in main()
85 System.out.println("Debuggee: nthreads = " + nthreads + ", nhits = " + nhits); in main()
87 MultiBreakpointsTarg ptr = new MultiBreakpointsTarg(nthreads, nhits); in main()
130 void console(final int num, final int nhits) { in console() argument
144 for( int i = 0; i < nhits; i++ ) { in console()
205 static int nhits; field in MultiBreakpointsTest
228 nhits = 100; in main()
230 nhits = Integer.parseInt(countStr); in main()
233 args = new String[] { "-J-Dnthreads=" + nthreads, "-J-Dnhits=" + nhits} ; in main()
[all …]
/dports/java/openjdk13/jdk13u-jdk-13.0.10-1-1/test/jdk/com/sun/jdi/
H A DMultiBreakpointsTest.java71 int nhits; in main() local
83 nhits = Integer.parseInt(nStr); in main()
85 System.out.println("Debuggee: nthreads = " + nthreads + ", nhits = " + nhits); in main()
87 MultiBreakpointsTarg ptr = new MultiBreakpointsTarg(nthreads, nhits); in main()
130 void console(final int num, final int nhits) { in console() argument
144 for( int i = 0; i < nhits; i++ ) { in console()
205 static int nhits; field in MultiBreakpointsTest
228 nhits = 100; in main()
230 nhits = Integer.parseInt(countStr); in main()
233 args = new String[] { "-J-Dnthreads=" + nthreads, "-J-Dnhits=" + nhits} ; in main()
[all …]
/dports/java/openjdk8/jdk8u-jdk8u312-b07.1/jdk/test/com/sun/jdi/
H A DMultiBreakpointsTest.java72 int nhits; in main() local
84 nhits = Integer.parseInt(nStr); in main()
86 System.out.println("Debuggee: nthreads = " + nthreads + ", nhits = " + nhits); in main()
88 MultiBreakpointsTarg ptr = new MultiBreakpointsTarg(nthreads, nhits); in main()
131 void console(final int num, final int nhits) { in console() argument
145 for( int i = 0; i < nhits; i++ ) { in console()
206 static int nhits; field in MultiBreakpointsTest
229 nhits = 100; in main()
231 nhits = Integer.parseInt(countStr); in main()
234 args = new String[] { "-J-Dnthreads=" + nthreads, "-J-Dnhits=" + nhits} ; in main()
[all …]
/dports/java/openjdk12/openjdk-jdk12u-jdk-12.0.2-10-4/test/jdk/com/sun/jdi/
H A DMultiBreakpointsTest.java71 int nhits; in main() local
83 nhits = Integer.parseInt(nStr); in main()
85 System.out.println("Debuggee: nthreads = " + nthreads + ", nhits = " + nhits); in main()
87 MultiBreakpointsTarg ptr = new MultiBreakpointsTarg(nthreads, nhits); in main()
130 void console(final int num, final int nhits) { in console() argument
144 for( int i = 0; i < nhits; i++ ) { in console()
205 static int nhits; field in MultiBreakpointsTest
228 nhits = 100; in main()
230 nhits = Integer.parseInt(countStr); in main()
233 args = new String[] { "-J-Dnthreads=" + nthreads, "-J-Dnhits=" + nhits} ; in main()
[all …]
/dports/java/openjdk15/jdk15u-jdk-15.0.6-1-1/test/jdk/com/sun/jdi/
H A DMultiBreakpointsTest.java71 int nhits; in main() local
83 nhits = Integer.parseInt(nStr); in main()
85 System.out.println("Debuggee: nthreads = " + nthreads + ", nhits = " + nhits); in main()
87 MultiBreakpointsTarg ptr = new MultiBreakpointsTarg(nthreads, nhits); in main()
130 void console(final int num, final int nhits) { in console() argument
144 for( int i = 0; i < nhits; i++ ) { in console()
205 static int nhits; field in MultiBreakpointsTest
228 nhits = 100; in main()
230 nhits = Integer.parseInt(countStr); in main()
233 args = new String[] { "-J-Dnthreads=" + nthreads, "-J-Dnhits=" + nhits} ; in main()
[all …]
/dports/java/openjdk16/jdk16u-jdk-16.0.2-7-1/test/jdk/com/sun/jdi/
H A DMultiBreakpointsTest.java71 int nhits; in main() local
83 nhits = Integer.parseInt(nStr); in main()
85 System.out.println("Debuggee: nthreads = " + nthreads + ", nhits = " + nhits); in main()
87 MultiBreakpointsTarg ptr = new MultiBreakpointsTarg(nthreads, nhits); in main()
130 void console(final int num, final int nhits) { in console() argument
144 for( int i = 0; i < nhits; i++ ) { in console()
205 static int nhits; field in MultiBreakpointsTest
228 nhits = 100; in main()
230 nhits = Integer.parseInt(countStr); in main()
233 args = new String[] { "-J-Dnthreads=" + nthreads, "-J-Dnhits=" + nhits} ; in main()
[all …]
/dports/java/openjdk17/jdk17u-jdk-17.0.1-12-1/test/jdk/com/sun/jdi/
H A DMultiBreakpointsTest.java71 int nhits; in main() local
83 nhits = Integer.parseInt(nStr); in main()
85 System.out.println("Debuggee: nthreads = " + nthreads + ", nhits = " + nhits); in main()
87 MultiBreakpointsTarg ptr = new MultiBreakpointsTarg(nthreads, nhits); in main()
130 void console(final int num, final int nhits) { in console() argument
144 for( int i = 0; i < nhits; i++ ) { in console()
205 static int nhits; field in MultiBreakpointsTest
228 nhits = 100; in main()
230 nhits = Integer.parseInt(countStr); in main()
233 args = new String[] { "-J-Dnthreads=" + nthreads, "-J-Dnhits=" + nhits} ; in main()
[all …]
/dports/java/openjdk11-jre/jdk11u-jdk-11.0.13-8-1/test/jdk/com/sun/jdi/
H A DMultiBreakpointsTest.java71 int nhits; in main() local
83 nhits = Integer.parseInt(nStr); in main()
85 System.out.println("Debuggee: nthreads = " + nthreads + ", nhits = " + nhits); in main()
87 MultiBreakpointsTarg ptr = new MultiBreakpointsTarg(nthreads, nhits); in main()
130 void console(final int num, final int nhits) { in console() argument
144 for( int i = 0; i < nhits; i++ ) { in console()
205 static int nhits; field in MultiBreakpointsTest
228 nhits = 100; in main()
230 nhits = Integer.parseInt(countStr); in main()
233 args = new String[] { "-J-Dnthreads=" + nthreads, "-J-Dnhits=" + nhits} ; in main()
[all …]
/dports/java/openjdk14/jdk14u-jdk-14.0.2-12-1/test/jdk/com/sun/jdi/
H A DMultiBreakpointsTest.java71 int nhits; in main() local
83 nhits = Integer.parseInt(nStr); in main()
85 System.out.println("Debuggee: nthreads = " + nthreads + ", nhits = " + nhits); in main()
87 MultiBreakpointsTarg ptr = new MultiBreakpointsTarg(nthreads, nhits); in main()
130 void console(final int num, final int nhits) { in console() argument
144 for( int i = 0; i < nhits; i++ ) { in console()
205 static int nhits; field in MultiBreakpointsTest
228 nhits = 100; in main()
230 nhits = Integer.parseInt(countStr); in main()
233 args = new String[] { "-J-Dnthreads=" + nthreads, "-J-Dnhits=" + nhits} ; in main()
[all …]
/dports/java/openjdk8-jre/jdk8u-jdk8u312-b07.1/jdk/test/com/sun/jdi/
H A DMultiBreakpointsTest.java72 int nhits; in main() local
84 nhits = Integer.parseInt(nStr); in main()
86 System.out.println("Debuggee: nthreads = " + nthreads + ", nhits = " + nhits); in main()
88 MultiBreakpointsTarg ptr = new MultiBreakpointsTarg(nthreads, nhits); in main()
131 void console(final int num, final int nhits) { in console() argument
145 for( int i = 0; i < nhits; i++ ) { in console()
206 static int nhits; field in MultiBreakpointsTest
229 nhits = 100; in main()
231 nhits = Integer.parseInt(countStr); in main()
234 args = new String[] { "-J-Dnthreads=" + nthreads, "-J-Dnhits=" + nhits} ; in main()
[all …]
/dports/biology/infernal/infernal-1.1.3/hmmer/testsuite/
H A Di19-hmmpgmd-ga.pl112 $nhits = 0;
119 $resultline[$nhits] = $line;
120 $bitscore[$nhits] = $2;
121 $nhits++;
135 if ($nhits == 3) { die "FAIL: ga thresholds not applied?"; }
136 if ($nhits != 1 && $resultline[0] ne $expected_line) { $daemon_active=1; tear_down(); die "FAIL: di…
H A Di22-hmmpgmd-shard-ga.pl94 $nhits = 0;
101 $resultline[$nhits] = $line;
102 $bitscore[$nhits] = $2;
103 $nhits++;
117 if ($nhits == 3) { die "FAIL: ga thresholds not applied?"; }
118 if ($nhits != 1 && $resultline[0] ne $expected_line) { $daemon_active=1; tear_down(); die "FAIL: di…
/dports/biology/hmmer/hmmer-3.3/testsuite/
H A Di19-hmmpgmd-ga.pl112 $nhits = 0;
119 $resultline[$nhits] = $line;
120 $bitscore[$nhits] = $2;
121 $nhits++;
135 if ($nhits == 3) { die "FAIL: ga thresholds not applied?"; }
136 if ($nhits != 1 && $resultline[0] ne $expected_line) { $daemon_active=1; tear_down(); die "FAIL: di…
H A Di22-hmmpgmd-shard-ga.pl94 $nhits = 0;
101 $resultline[$nhits] = $line;
102 $bitscore[$nhits] = $2;
103 $nhits++;
117 if ($nhits == 3) { die "FAIL: ga thresholds not applied?"; }
118 if ($nhits != 1 && $resultline[0] ne $expected_line) { $daemon_active=1; tear_down(); die "FAIL: di…
/dports/biology/hmmer/hmmer-3.3/easel/demotic/
H A Ddemotic_hmmer.pm38 $nhits = 0; # Number of entries in the hit list
87 $hit_target[$nhits] = $6;
89 $hit_bitscore[$nhits] = $2;
90 $hit_Eval[$nhits] = $1;
91 $nhits++;
114 $ali_hitidx[$nali] = $nhits-1;
209 for ($i = 0; $i < $nhits; $i++) {
H A Ddemotic_h2.pm34 $nhits = 0; # Number of entries in the hit list
81 $hit_target[$nhits] = $1;
83 $hit_bitscore[$nhits] = $3;
84 $hit_Eval[$nhits] = $4;
85 $nhits++;
181 for ($i = 0; $i < $nhits; $i++) {
H A Ddemotic_blast.pm41 $nhits = 0; # Number of entries in the hit list
125 $hit_target[$nhits] = $1;
127 $hit_bitscore[$nhits] = $3;
129 if ($is_wublast) { $hit_Eval[$nhits] = $4; } # actually WU reports P-value
130 else { $hit_Eval[$nhits] = &repair_evalue($4); }
132 $nhits++;
278 for ($i = 0; $i < $nhits; $i++) {
/dports/biology/infernal/infernal-1.1.3/easel/demotic/
H A Ddemotic_hmmer.pm38 $nhits = 0; # Number of entries in the hit list
87 $hit_target[$nhits] = $6;
89 $hit_bitscore[$nhits] = $2;
90 $hit_Eval[$nhits] = $1;
91 $nhits++;
114 $ali_hitidx[$nali] = $nhits-1;
209 for ($i = 0; $i < $nhits; $i++) {
H A Ddemotic_h2.pm34 $nhits = 0; # Number of entries in the hit list
81 $hit_target[$nhits] = $1;
83 $hit_bitscore[$nhits] = $3;
84 $hit_Eval[$nhits] = $4;
85 $nhits++;
181 for ($i = 0; $i < $nhits; $i++) {
/dports/biology/emboss/EMBOSS-6.6.0/emboss/
H A Dantigenic.c40 static void antigenic_dumptoFeat(ajint nhits, const AjPUint hp,
95 ajint nhits; in main() local
177 lenap = nhits = maxlen = maxpos = 0; in main()
192 ajUintPut(&hp,nhits,nhits); in main()
193 ajUintPut(&hpos,nhits,i-lenap); in main()
194 ajFloatPut(&hwt,nhits,score); in main()
195 ajUintPut(&hlen,nhits++,lenap); in main()
218 nhits,minap,averap); in main()
238 if(nhits) in main()
245 for(ii=nhits-1,j=0;ii>-1;--ii) in main()
[all …]

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