Searched refs:nindelbreaks (Results 1 – 4 of 4) sorted by relevance
| /dports/biology/gmap/gmap-2020-09-12/src/ |
| H A D | pair.h | 190 int *nindelbreaks, struct T *pairs, int npairs, int querylength);
292 Pair_nmismatches_region (int *nindelbreaks, int *nbadintrons, struct T *pairs, int npairs,
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| H A D | pair.c | 4716 int *nindelbreaks, struct T *pairs, int npairs, int querylength) { in Pair_gsnap_nsegments() argument
4725 *nindelbreaks = 0; in Pair_gsnap_nsegments()
4771 (*nindelbreaks) += 1; in Pair_gsnap_nsegments()
4786 (*nindelbreaks) += 1; in Pair_gsnap_nsegments()
7606 Pair_nmismatches_region (int *nindelbreaks, int *nbadintrons, struct T *pairs, int npairs, in Pair_nmismatches_region() argument
7616 *nindelbreaks = *nbadintrons = 0; in Pair_nmismatches_region()
7660 (*nindelbreaks) += 1; in Pair_nmismatches_region()
7669 (*nindelbreaks) += 1; in Pair_nmismatches_region()
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| H A D | stage3hr.c | 3985 int nindelbreaks, n_large_indels; in Stage3end_nmatches_substrings() local
4252 nindelbreaks = 0; in Stage3end_nmatches_substrings()
4264 nindelbreaks++; in Stage3end_nmatches_substrings()
4269 nindelbreaks++; in Stage3end_nmatches_substrings()
4277 nmatches = nmatches - nindelbreaks*indel_penalty_middle - n_large_indels*3; in Stage3end_nmatches_substrings()
4333 int nsites, nindelbreaks, n_large_indels; in Stage3end_new_substrings() local
4853 nindelbreaks = 0; in Stage3end_new_substrings()
4859 nindelbreaks++; in Stage3end_new_substrings()
4864 nindelbreaks++; in Stage3end_new_substrings()
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| /dports/biology/gmap/gmap-2020-09-12/ |
| H A D | ChangeLog | 2914 branches/2017-03-07-multimapper-genes) to remove nindelbreaks field, since
2918 branches/2017-03-07-multimapper-genes to add nindelbreaks field
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