Searched refs:nindels_rev (Results 1 – 1 of 1) sorted by relevance
| /dports/biology/gmap/gmap-2020-09-12/src/ |
| H A D | stage3.c | 5593 …_fwd, int nmismatches_fwd, int nmatches_rev, int nmismatches_rev, int nindels_fwd, int nindels_rev, in pick_cdna_direction() argument
5819 …_fwd, int nmismatches_fwd, int nmatches_rev, int nmismatches_rev, int nindels_fwd, int nindels_rev, in initial_cdna_direction() argument
15874 int nmatches_fwd, nmismatches_fwd, nmatches_rev, nmismatches_rev, nindels_fwd, nindels_rev; in Stage3_compute_ends() local
16468 /* alignment_score_rev = */ score_alignment(&nmatches_rev,&nmismatches_rev,&nindels_rev, in Stage3_compute_ends()
16482 nmatches_fwd,nmismatches_fwd,nmatches_rev,nmismatches_rev,nindels_fwd,nindels_rev, in Stage3_compute_ends()
16753 int nmatches_fwd, nmismatches_fwd, nmatches_rev, nmismatches_rev, nindels_fwd, nindels_rev; in Stage3_compute_one() local
17262 /* alignment_score_rev = */ score_alignment(&nmatches_rev,&nmismatches_rev,&nindels_rev, in Stage3_compute_one()
17276 nmatches_fwd,nmismatches_fwd,nmatches_rev,nmismatches_rev,nindels_fwd,nindels_rev, in Stage3_compute_one()
18456 nmatches_rev, nmismatches_rev, nindels_rev, in recompute_for_cdna_direction() local
18512 /* alignment_score_rev = */ score_alignment(&nmatches_rev,&nmismatches_rev,&nindels_rev, in recompute_for_cdna_direction()
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