Searched refs:nmatches_posttrim (Results 1 – 2 of 2) sorted by relevance
| /dports/biology/gmap/gmap-2020-09-12/src/ |
| H A D | gmap.c | 1278 int nmatches_posttrim, max_match_length, ambig_end_length_5, ambig_end_length_3; in update_stage3list() local
1340 &matches,&nmatches_posttrim,&max_match_length, in update_stage3list()
1456 int nmatches_posttrim, max_match_length, ambig_end_length_5, ambig_end_length_3; in stage3_from_usersegment() local
1517 &matches,&nmatches_posttrim,&max_match_length, in stage3_from_usersegment()
1787 int nmatches_posttrim, max_match_length, ambig_end_length_5, ambig_end_length_3; in stage3_from_gregions() local
1913 &matches,&nmatches_posttrim,&max_match_length, in stage3_from_gregions()
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| /dports/biology/gmap/gmap-2020-09-12/ |
| H A D | ChangeLog | 1130 * stage3hr.c: Improved tradeoffs between nmatches, nmatches_posttrim, splice
1155 * stage3hr.c: At a given locus, checking for nmatches_posttrim before
3548 comparing alignments, using nmatches rather than nmatches_posttrim
3628 * stage3hr.c: Defining nmatches to be nmatches_posttrim plus amb length.
3638 * substring.c: Defining nmatches to be nmatches_posttrim plus ambiguous
3647 * stage3hr.c: Using number of matches and nmatches_posttrim in
6945 * stage1hr.c: Using nmatches_posttrim in evaluating alignments. Doing a
9509 * stage3hr.c: Switching back to old GMAP filter, where nmatches_posttrim
10934 * stage3hr.c, stage3hr.h: Using nmatches_posttrim (adjusted by scores for
11926 * stage3hr.c: Keeping hits in optimal scoring if nmatches_posttrim is
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