| /dports/biology/bowtie2/bowtie2-2.4.4/ |
| H A D | aligner_driver.h | 107 bool nofw, // don't add roots for fw read
144 bool nofw, // don't add roots for fw read
222 bool nofw, in initRead() argument
230 dr1_.initRead(q1, nofw, norc, minsc, maxpen, q2, sel_); in initRead()
236 dr2_.initRead(*q2, nofw, norc, minsc, maxpen, &q1, sel_); in initRead()
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| H A D | aligner_driver.cpp | 25 bool nofw, in select() argument
83 if((fw && nofw) || (!fw && norc)) { in select()
184 bool nofw, in select() argument
211 if((fw && nofw) || (!fw && norc)) { in select()
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| H A D | bt2_search.cpp | 3295 bool nofw[2] = { false, false }; in multiseedSearchWorker() local
3394 nofw[mate], // nofw? in multiseedSearchWorker()
3456 nofw[mate], // don't align forward read in multiseedSearchWorker()
3578 bool yfw = minedfw[mate] <= 1 && !nofw[mate]; in multiseedSearchWorker()
3638 nofw[mate], // don't align forward read in multiseedSearchWorker()
3809 nofw[mate], // don't align forward read in multiseedSearchWorker()
3914 nofw[mate], // don't align forward read in multiseedSearchWorker()
4044 if(!nofw[mate] && !norc[mate]) { in multiseedSearchWorker()
4351 bool nofw[2] = { false, false }; in multiseedSearchWorker_2p5() local
4353 nofw[0] = paired ? (gMate1fw ? gNofw : gNorc) : gNofw; in multiseedSearchWorker_2p5()
[all …]
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| /dports/biology/hisat2/hisat2-2.2.1/ |
| H A D | aligner_driver.h | 107 bool nofw, // don't add roots for fw read
165 bool nofw, in initRead() argument
171 dr1_.initRead(q1, nofw, norc, minsc, maxpen, q2, &sel_); in initRead()
175 dr2_.initRead(*q2, nofw, norc, minsc, maxpen, &q1, &sel_); in initRead()
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| H A D | aligner_driver.cpp | 25 bool nofw, in select() argument
39 if((fw && nofw) || (!fw && norc)) { in select()
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| H A D | aligner_seed.h | 1425 bool nofw, // don't align forward read
1469 bool nofw, // don't align forward read
1487 bool nofw, // don't align forward read
1644 bool nofw, // don't align forward read in instantiateSeeds() argument
1676 if((fw && nofw) || (!fw && norc)) { in instantiateSeeds()
1883 bool nofw, // don't align forward read in exactSweep() argument
1899 if( fw && nofw) continue; in exactSweep()
2014 bool nofw, // don't align forward read in oneMmSearch() argument
2061 if( fw && nofw) continue; in oneMmSearch()
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| /dports/biology/bowtie/bowtie-1.3.1/ |
| H A D | search_23mm_phase2.c | 11 if(!nofw) {
39 if(nofw && sink->finishedWithStratum(1)) {
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| H A D | search_23mm_phase1.c | 21 if(!nofw) {
43 if(nofw && sink->finishedWithStratum(0)) { // no more exact hits are possible
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| H A D | search_1mm_phase1.c | 17 if(!nofw) {
57 if(!nofw) {
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| H A D | search_seeded_phase1.c | 46 if(!nofw) {
85 if(nofw && sink->finishedWithStratum(0)) { // no more exact hits are possible
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| H A D | search_1mm_phase2.c | 22 if(!nofw) {
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| H A D | search_exact.c | 9 if(!nofw) {
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| H A D | search_23mm_phase3.c | 9 if(!nofw) {
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| H A D | search_seeded_phase4.c | 9 if(!nofw) {
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| H A D | search_seeded_phase2.c | 9 if(!nofw) {
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| H A D | ebwt_search.cpp | 122 static bool nofw; // don't align fw orientation of read variable
225 nofw = false; // don't align fw orientation of read in resetOptions()
783 case ARG_NO_FW: nofw = true; break; in parseOptions()
1246 !nofw,
1265 !nofw,
1534 !nofw,
1554 !nofw,
1982 !nofw,
2002 !nofw,
2639 !nofw,
[all …]
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| H A D | search_seeded_phase3.c | 94 if(nofw) { // no more 1-mm-in-seed hits are possible
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| /dports/multimedia/v4l_compat/linux-5.13-rc2/drivers/usb/misc/ |
| H A D | emi26.c | 88 goto nofw; in emi26_load_firmware()
93 goto nofw; in emi26_load_firmware()
98 nofw: in emi26_load_firmware()
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| H A D | emi62.c | 97 goto nofw; in emi62_load_firmware()
102 goto nofw; in emi62_load_firmware()
106 nofw: in emi62_load_firmware()
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| /dports/multimedia/libv4l/linux-5.13-rc2/drivers/usb/misc/ |
| H A D | emi26.c | 88 goto nofw; in emi26_load_firmware()
93 goto nofw; in emi26_load_firmware()
98 nofw: in emi26_load_firmware()
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| H A D | emi62.c | 97 goto nofw; in emi62_load_firmware()
102 goto nofw; in emi62_load_firmware()
106 nofw: in emi62_load_firmware()
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| /dports/multimedia/v4l-utils/linux-5.13-rc2/drivers/usb/misc/ |
| H A D | emi26.c | 88 goto nofw; in emi26_load_firmware()
93 goto nofw; in emi26_load_firmware()
98 nofw: in emi26_load_firmware()
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| H A D | emi62.c | 97 goto nofw; in emi62_load_firmware()
102 goto nofw; in emi62_load_firmware()
106 nofw: in emi62_load_firmware()
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| /dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/nasm/asm/ |
| H A D | parser.c | 947 bool nofw = false; in parse_line() local
965 done = nofw = true; in parse_line()
972 nofw = true; in parse_line()
978 done = nofw = true; in parse_line()
982 if (!nofw) in parse_line()
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| /dports/devel/nasm/nasm-2.15.05/asm/ |
| H A D | parser.c | 954 bool nofw = false; in parse_line() local
972 done = nofw = true; in parse_line()
979 nofw = true; in parse_line()
985 done = nofw = true; in parse_line()
989 if (!nofw) in parse_line()
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