Searched refs:nointronlenp (Results 1 – 6 of 6) sorted by relevance
| /dports/biology/gmap/gmap-2020-09-12/src/ |
| H A D | output.c | 43 static bool nointronlenp; variable
113 nointronlenp = nointronlenp_in; in Output_setup()
846 /*flipgenomep*/true,invertmode,nointronlenp,wraplength); in Output_filestring_fromresult()
875 /*flipgenomep*/true,invertmode,nointronlenp,wraplength); in Output_filestring_fromresult()
892 /*flipgenomep*/true,invertmode,nointronlenp,wraplength); in Output_filestring_fromresult()
|
| H A D | pair.h | 89 bool genomefirstp, int invertmode, bool nointronlenp);
96 int invertmode, bool nointronlenp, int wraplength);
|
| H A D | stage3.h | 277 int invertmode, bool nointronlenp, int wraplength);
|
| H A D | gmap.c | 463 static bool nointronlenp = false; variable
5397 invertmode,nointronlenp,wraplength,
6320 case 'N': nointronlenp = true; break; in parse_command_line()
7039 printtype,invertmode,wraplength,ngap,nointronlenp,sam_paired_p,cds_startpos, in main()
|
| H A D | pair.c | 982 bool genomefirstp, int invertmode, bool nointronlenp) { in Pair_print_continuous() argument
999 if (nointronlenp == false) { in Pair_print_continuous()
1177 int invertmode, bool nointronlenp, int wraplength) { in Pair_print_alignment() argument
1203 if (nointronlenp == false) { in Pair_print_alignment()
|
| H A D | stage3.c | 6729 char *dbversion, bool showalignp, int invertmode, bool nointronlenp, int wraplength) {
6751 chromosome_iit,this->watsonp,invertmode,nointronlenp,wraplength);
6929 int invertmode, bool nointronlenp, int wraplength) { in Stage3_print_alignment() argument
6937 genomefirstp,invertmode,nointronlenp); in Stage3_print_alignment()
6944 chromosome_iit,this->watsonp,invertmode,nointronlenp,wraplength); in Stage3_print_alignment()
|