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Searched refs:npaths_sub1 (Results 1 – 3 of 3) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A Dchimera.c483 Stage3_T *stage3array_sub1, int npaths_sub1, Stage3_T *stage3array_sub2, int npaths_sub2, in Chimera_bestpath() argument
496 matrix_sub1 = (int **) CALLOC(npaths_sub1,sizeof(int *)); in Chimera_bestpath()
497 gapp_sub1 = (bool **) CALLOC(npaths_sub1,sizeof(bool *)); in Chimera_bestpath()
499 for (i = 0; i < npaths_sub1; i++) { in Chimera_bestpath()
529 debug4(printf("npaths_sub1 = %d, npaths_sub2 = %d\n",npaths_sub1,npaths_sub2)); in Chimera_bestpath()
530 for (i = 0; i < npaths_sub1; i++) { in Chimera_bestpath()
587 for (i = 0; i < npaths_sub1; i++) { in Chimera_bestpath()
620 for (i = 0; i < npaths_sub1; i++) { in Chimera_bestpath()
H A Dgmap.c2113 *npaths_sub1 = 0; in local_separate_paths()
2195 *npaths_sub1 = *npaths_sub2 = 0; in local_separate_paths()
2202 (*npaths_sub1)++; in local_separate_paths()
2212 *npaths_sub1 = 0; in local_separate_paths()
2268 *npaths_sub1 = 0; in distant_separate_paths()
2318 *npaths_sub1 = *npaths_sub2 = 0; in distant_separate_paths()
2322 (*npaths_sub1)++; in distant_separate_paths()
2331 *npaths_sub1 = 0; in distant_separate_paths()
2671 int npaths_sub1 = 0, npaths_sub2 = 0; in check_for_local() local
2965 } else if (npaths_sub1 == 0) { in check_for_local()
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H A Dchimera.h53 Stage3_T *stage3array_sub1, int npaths_sub1, Stage3_T *stage3array_sub2, int npaths_sub2,