| /dports/biology/gmap/gmap-2020-09-12/src/ |
| H A D | iit_get.c | 717 *nleftflanks = *nrightflanks = 0; in get_matches()
762 *nleftflanks = *nrightflanks = 0; in get_matches()
1177 &leftflanks,&nleftflanks,&rightflanks,&nrightflanks, in main()
1185 &leftflanks,&nleftflanks,&rightflanks,&nrightflanks, in main()
1217 for (i = 0; i < nrightflanks; i++) { in main()
1253 &leftflanks,&nleftflanks,&rightflanks,&nrightflanks, in main()
1263 &leftflanks,&nleftflanks,&rightflanks,&nrightflanks, in main()
1280 &leftflanks,&nleftflanks,&rightflanks,&nrightflanks, in main()
1287 &leftflanks,&nleftflanks,&rightflanks,&nrightflanks, in main()
1294 &leftflanks,&nleftflanks,&rightflanks,&nrightflanks, in main()
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| H A D | iit-read.h | 178 IIT_get_flanking (int **leftflanks, int *nleftflanks, int **rightflanks, int *nrightflanks,
181 …_get_flanking_with_divno (int **leftflanks, int *nleftflanks, int **rightflanks, int *nrightflanks,
184 IIT_get_flanking_typed (int **leftflanks, int *nleftflanks, int **rightflanks, int *nrightflanks,
188 …_flanking_multiple_typed (int **leftflanks, int *nleftflanks, int **rightflanks, int *nrightflanks,
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| H A D | get-genome.c | 478 int **leftflanks, int *nleftflanks, int **rightflanks, int *nrightflanks, in get_matches() argument
509 … IIT_get_flanking(&(*leftflanks),&(*nleftflanks),&(*rightflanks),&(*nrightflanks),*iit,divstring, in get_matches()
521 … IIT_get_flanking(&(*leftflanks),&(*nleftflanks),&(*rightflanks),&(*nrightflanks),*iit,divstring, in get_matches()
535 …IIT_get_flanking_typed(&(*leftflanks),&(*nleftflanks),&(*rightflanks),&(*nrightflanks),*iit,divstr… in get_matches()
939 int *matches, nmatches, ndivs, i, *leftflanks, *rightflanks, nleftflanks = 0, nrightflanks = 0; in main() local
1611 &leftflanks,&nleftflanks,&rightflanks,&nrightflanks, in main()
1635 for (i = 0; i < nrightflanks; i++) { in main()
1688 for (i = 0; i < nrightflanks; i++) { in main()
1803 &leftflanks,&nleftflanks,&rightflanks,&nrightflanks, in main()
1822 for (i = 0; i < nrightflanks; i++) { in main()
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| H A D | iit-read.c | 5212 *nrightflanks = 0; in IIT_get_flanking()
5225 if (*nrightflanks < nflanking) { in IIT_get_flanking()
5258 for (i = 0; i < *nrightflanks; i++) { in IIT_get_flanking()
5292 *nrightflanks = 0; in IIT_get_flanking_with_divno()
5305 if (*nrightflanks < nflanking) { in IIT_get_flanking_with_divno()
5338 for (i = 0; i < *nrightflanks; i++) { in IIT_get_flanking_with_divno()
5376 *nrightflanks = 0; in IIT_get_flanking_typed()
5392 if (*nrightflanks < nflanking) { in IIT_get_flanking_typed()
5427 for (i = 0; i < *nrightflanks; i++) { in IIT_get_flanking_typed()
5464 *nrightflanks = 0; in IIT_get_flanking_multiple_typed()
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| H A D | stage3.c | 6770 int *iit_matches = NULL, nmatches, *leftflanks, nleftflanks, *rightflanks, nrightflanks; in print_map() local
6798 IIT_get_flanking_with_divno(&leftflanks,&nleftflanks,&rightflanks,&nrightflanks,map_iit, in print_map()
6802 FPRINTF(fp," Map hits for path %d (%d|%d|%d):\n",pathnum,nleftflanks,nmatches,nrightflanks); in print_map()
6815 IIT_print_header(fp,map_iit,rightflanks,nrightflanks,chr, in print_map()
6822 IIT_get_flanking_with_divno(&leftflanks,&nleftflanks,&rightflanks,&nrightflanks,map_iit, in print_map()
6826 FPRINTF(fp," Map hits for path %d (%d|%d|%d):\n",pathnum,nleftflanks,nmatches,nrightflanks); in print_map()
6839 IIT_print_header(fp,map_iit,rightflanks,nrightflanks,chr, in print_map()
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