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Searched refs:obj_feat (Results 1 – 10 of 10) sorted by relevance

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/edit/
H A Dfield_handler.cpp98 CBioseq_Handle bsh = scope->GetBioseqHandle(obj_feat->GetLocation()); in GetApplyObjectsFromRelatedObjects()
99 CRef<CApplyObject> apply(new CApplyObject(bsh, *obj_feat)); in GetApplyObjectsFromRelatedObjects()
218 CSeqFeatData::ESubtype obj_type = obj_feat.GetData().GetSubtype(); in GetRelatedFeatures()
225 CBioseq_Handle p_bsh = scope->GetBioseqHandle(obj_feat.GetLocation()); in GetRelatedFeatures()
229 CBioseq_Handle p_bsh = scope->GetBioseqHandle(obj_feat.GetLocation()); in GetRelatedFeatures()
242 if (obj_feat.IsSetProduct()) { in GetRelatedFeatures()
247 const CSeq_feat* cds = sequence::GetBestCdsForMrna(obj_feat, *scope); in GetRelatedFeatures()
253 feature::GetCdssForGene(scope->GetSeq_featHandle(obj_feat), cds_feats); in GetRelatedFeatures()
268 sequence::GetOverlappingFeatures (obj_feat.GetLocation(), in GetRelatedFeatures()
278 CConstRef<CSeq_feat> f = sequence::GetBestMrnaForCds(obj_feat, *scope); in GetRelatedFeatures()
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H A Dtext_desc_field.cpp114 const CSeq_feat * obj_feat = dynamic_cast<const CSeq_feat *>(&object); in GetRelatedObjects() local
116 if (obj_feat) { in GetRelatedObjects()
118 CBioseq_Handle bsh = scope->GetBioseqHandle(obj_feat->GetLocation()); in GetRelatedObjects()
139 const CSeq_feat * obj_feat = dynamic_cast<const CSeq_feat *>(&(object.GetObject())); in GetRelatedObjects() local
143 if (obj_feat) { in GetRelatedObjects()
H A Ddblink_field.cpp434 const CSeq_feat * obj_feat = dynamic_cast<const CSeq_feat *>(&object); in GetRelatedObjects() local
436 if (obj_feat) { in GetRelatedObjects()
438 CBioseq_Handle bsh = scope->GetBioseqHandle(obj_feat->GetLocation()); in GetRelatedObjects()
459 const CSeq_feat * obj_feat = dynamic_cast<const CSeq_feat *>(&object); in GetRelatedObjects() local
461 if (obj_feat) { in GetRelatedObjects()
H A Dstruc_comm_field.cpp378 const CSeq_feat * obj_feat = dynamic_cast<const CSeq_feat *>(&object); in GetRelatedObjects() local
380 if (obj_feat) { in GetRelatedObjects()
382 CBioseq_Handle bsh = scope->GetBioseqHandle(obj_feat->GetLocation()); in GetRelatedObjects()
403 const CSeq_feat * obj_feat = dynamic_cast<const CSeq_feat *>(&object); in GetRelatedObjects() local
405 if (obj_feat) { in GetRelatedObjects()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/edit/
H A Dfield_handler.cpp98 CBioseq_Handle bsh = scope->GetBioseqHandle(obj_feat->GetLocation()); in GetApplyObjectsFromRelatedObjects()
99 CRef<CApplyObject> apply(new CApplyObject(bsh, *obj_feat)); in GetApplyObjectsFromRelatedObjects()
218 CSeqFeatData::ESubtype obj_type = obj_feat.GetData().GetSubtype(); in GetRelatedFeatures()
225 CBioseq_Handle p_bsh = scope->GetBioseqHandle(obj_feat.GetLocation()); in GetRelatedFeatures()
229 CBioseq_Handle p_bsh = scope->GetBioseqHandle(obj_feat.GetLocation()); in GetRelatedFeatures()
242 if (obj_feat.IsSetProduct()) { in GetRelatedFeatures()
247 const CSeq_feat* cds = sequence::GetBestCdsForMrna(obj_feat, *scope); in GetRelatedFeatures()
253 feature::GetCdssForGene(scope->GetSeq_featHandle(obj_feat), cds_feats); in GetRelatedFeatures()
268 sequence::GetOverlappingFeatures (obj_feat.GetLocation(), in GetRelatedFeatures()
278 CConstRef<CSeq_feat> f = sequence::GetBestMrnaForCds(obj_feat, *scope); in GetRelatedFeatures()
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H A Dtext_desc_field.cpp114 const CSeq_feat * obj_feat = dynamic_cast<const CSeq_feat *>(&object); in GetRelatedObjects() local
116 if (obj_feat) { in GetRelatedObjects()
118 CBioseq_Handle bsh = scope->GetBioseqHandle(obj_feat->GetLocation()); in GetRelatedObjects()
139 const CSeq_feat * obj_feat = dynamic_cast<const CSeq_feat *>(&(object.GetObject())); in GetRelatedObjects() local
143 if (obj_feat) { in GetRelatedObjects()
H A Ddblink_field.cpp434 const CSeq_feat * obj_feat = dynamic_cast<const CSeq_feat *>(&object); in GetRelatedObjects() local
436 if (obj_feat) { in GetRelatedObjects()
438 CBioseq_Handle bsh = scope->GetBioseqHandle(obj_feat->GetLocation()); in GetRelatedObjects()
459 const CSeq_feat * obj_feat = dynamic_cast<const CSeq_feat *>(&object); in GetRelatedObjects() local
461 if (obj_feat) { in GetRelatedObjects()
H A Dstruc_comm_field.cpp378 const CSeq_feat * obj_feat = dynamic_cast<const CSeq_feat *>(&object); in GetRelatedObjects() local
380 if (obj_feat) { in GetRelatedObjects()
382 CBioseq_Handle bsh = scope->GetBioseqHandle(obj_feat->GetLocation()); in GetRelatedObjects()
403 const CSeq_feat * obj_feat = dynamic_cast<const CSeq_feat *>(&object); in GetRelatedObjects() local
405 if (obj_feat) { in GetRelatedObjects()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/edit/
H A Dfield_handler.hpp86 NCBI_XOBJEDIT_EXPORT vector<CConstRef<CSeq_feat> > GetRelatedFeatures(const CSeq_feat& obj_feat, CS…
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objtools/edit/
H A Dfield_handler.hpp86 NCBI_XOBJEDIT_EXPORT vector<CConstRef<CSeq_feat> > GetRelatedFeatures(const CSeq_feat& obj_feat, CS…