Searched refs:obj_feat (Results 1 – 10 of 10) sorted by relevance
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/edit/ |
H A D | field_handler.cpp | 98 CBioseq_Handle bsh = scope->GetBioseqHandle(obj_feat->GetLocation()); in GetApplyObjectsFromRelatedObjects() 99 CRef<CApplyObject> apply(new CApplyObject(bsh, *obj_feat)); in GetApplyObjectsFromRelatedObjects() 218 CSeqFeatData::ESubtype obj_type = obj_feat.GetData().GetSubtype(); in GetRelatedFeatures() 225 CBioseq_Handle p_bsh = scope->GetBioseqHandle(obj_feat.GetLocation()); in GetRelatedFeatures() 229 CBioseq_Handle p_bsh = scope->GetBioseqHandle(obj_feat.GetLocation()); in GetRelatedFeatures() 242 if (obj_feat.IsSetProduct()) { in GetRelatedFeatures() 247 const CSeq_feat* cds = sequence::GetBestCdsForMrna(obj_feat, *scope); in GetRelatedFeatures() 253 feature::GetCdssForGene(scope->GetSeq_featHandle(obj_feat), cds_feats); in GetRelatedFeatures() 268 sequence::GetOverlappingFeatures (obj_feat.GetLocation(), in GetRelatedFeatures() 278 CConstRef<CSeq_feat> f = sequence::GetBestMrnaForCds(obj_feat, *scope); in GetRelatedFeatures() [all …]
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H A D | text_desc_field.cpp | 114 const CSeq_feat * obj_feat = dynamic_cast<const CSeq_feat *>(&object); in GetRelatedObjects() local 116 if (obj_feat) { in GetRelatedObjects() 118 CBioseq_Handle bsh = scope->GetBioseqHandle(obj_feat->GetLocation()); in GetRelatedObjects() 139 const CSeq_feat * obj_feat = dynamic_cast<const CSeq_feat *>(&(object.GetObject())); in GetRelatedObjects() local 143 if (obj_feat) { in GetRelatedObjects()
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H A D | dblink_field.cpp | 434 const CSeq_feat * obj_feat = dynamic_cast<const CSeq_feat *>(&object); in GetRelatedObjects() local 436 if (obj_feat) { in GetRelatedObjects() 438 CBioseq_Handle bsh = scope->GetBioseqHandle(obj_feat->GetLocation()); in GetRelatedObjects() 459 const CSeq_feat * obj_feat = dynamic_cast<const CSeq_feat *>(&object); in GetRelatedObjects() local 461 if (obj_feat) { in GetRelatedObjects()
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H A D | struc_comm_field.cpp | 378 const CSeq_feat * obj_feat = dynamic_cast<const CSeq_feat *>(&object); in GetRelatedObjects() local 380 if (obj_feat) { in GetRelatedObjects() 382 CBioseq_Handle bsh = scope->GetBioseqHandle(obj_feat->GetLocation()); in GetRelatedObjects() 403 const CSeq_feat * obj_feat = dynamic_cast<const CSeq_feat *>(&object); in GetRelatedObjects() local 405 if (obj_feat) { in GetRelatedObjects()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/edit/ |
H A D | field_handler.cpp | 98 CBioseq_Handle bsh = scope->GetBioseqHandle(obj_feat->GetLocation()); in GetApplyObjectsFromRelatedObjects() 99 CRef<CApplyObject> apply(new CApplyObject(bsh, *obj_feat)); in GetApplyObjectsFromRelatedObjects() 218 CSeqFeatData::ESubtype obj_type = obj_feat.GetData().GetSubtype(); in GetRelatedFeatures() 225 CBioseq_Handle p_bsh = scope->GetBioseqHandle(obj_feat.GetLocation()); in GetRelatedFeatures() 229 CBioseq_Handle p_bsh = scope->GetBioseqHandle(obj_feat.GetLocation()); in GetRelatedFeatures() 242 if (obj_feat.IsSetProduct()) { in GetRelatedFeatures() 247 const CSeq_feat* cds = sequence::GetBestCdsForMrna(obj_feat, *scope); in GetRelatedFeatures() 253 feature::GetCdssForGene(scope->GetSeq_featHandle(obj_feat), cds_feats); in GetRelatedFeatures() 268 sequence::GetOverlappingFeatures (obj_feat.GetLocation(), in GetRelatedFeatures() 278 CConstRef<CSeq_feat> f = sequence::GetBestMrnaForCds(obj_feat, *scope); in GetRelatedFeatures() [all …]
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H A D | text_desc_field.cpp | 114 const CSeq_feat * obj_feat = dynamic_cast<const CSeq_feat *>(&object); in GetRelatedObjects() local 116 if (obj_feat) { in GetRelatedObjects() 118 CBioseq_Handle bsh = scope->GetBioseqHandle(obj_feat->GetLocation()); in GetRelatedObjects() 139 const CSeq_feat * obj_feat = dynamic_cast<const CSeq_feat *>(&(object.GetObject())); in GetRelatedObjects() local 143 if (obj_feat) { in GetRelatedObjects()
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H A D | dblink_field.cpp | 434 const CSeq_feat * obj_feat = dynamic_cast<const CSeq_feat *>(&object); in GetRelatedObjects() local 436 if (obj_feat) { in GetRelatedObjects() 438 CBioseq_Handle bsh = scope->GetBioseqHandle(obj_feat->GetLocation()); in GetRelatedObjects() 459 const CSeq_feat * obj_feat = dynamic_cast<const CSeq_feat *>(&object); in GetRelatedObjects() local 461 if (obj_feat) { in GetRelatedObjects()
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H A D | struc_comm_field.cpp | 378 const CSeq_feat * obj_feat = dynamic_cast<const CSeq_feat *>(&object); in GetRelatedObjects() local 380 if (obj_feat) { in GetRelatedObjects() 382 CBioseq_Handle bsh = scope->GetBioseqHandle(obj_feat->GetLocation()); in GetRelatedObjects() 403 const CSeq_feat * obj_feat = dynamic_cast<const CSeq_feat *>(&object); in GetRelatedObjects() local 405 if (obj_feat) { in GetRelatedObjects()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/edit/ |
H A D | field_handler.hpp | 86 NCBI_XOBJEDIT_EXPORT vector<CConstRef<CSeq_feat> > GetRelatedFeatures(const CSeq_feat& obj_feat, CS…
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objtools/edit/ |
H A D | field_handler.hpp | 86 NCBI_XOBJEDIT_EXPORT vector<CConstRef<CSeq_feat> > GetRelatedFeatures(const CSeq_feat& obj_feat, CS…
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