oligoindex (reference) in projects: dports

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Searched refs:oligoindex (Results 1 – 3 of 3) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A D	stage2.c	5834 Oligoindex_T oligoindex; in Stage2_scan() local 5898 counts = Oligoindex_counts_copy(oligoindex); in Stage2_scan() 5952 Oligoindex_untally(oligoindex); in Stage2_scan() 6563 Oligoindex_T oligoindex; in Stage2_compute() local 7038 Oligoindex_untally(oligoindex); in Stage2_compute() 7079 Oligoindex_T oligoindex; in Stage2_compute_one() local 7219 Oligoindex_untally(oligoindex); in Stage2_compute_one() 7251 Oligoindex_T oligoindex; in Stage2_compute_starts() local 7409 Oligoindex_untally(oligoindex); in Stage2_compute_starts() 7445 Oligoindex_T oligoindex; in Stage2_compute_ends() local [all …]
H A D	gmap.c	`901 Oligoindex_T oligoindex) { in evaluate_query() argument 909 &diagnostic->query_trim_end,oligoindex,queryuc_ptr, in evaluate_query() 917 &diagnostic->query_trim_end,oligoindex,queryuc_ptr, in evaluate_query()`
/dports/biology/gmap/gmap-2020-09-12/
H A D	ChangeLog	9929 * oligoindex.c, oligoindex.h: Added debugging procedure 10852 gsnap.c, intlist.c, intlist.h, oligoindex.c, oligoindex.h, 16953 * oligoindex.c: Added necessary clearing of oligoindex. 17266 * oligoindex.c, oligoindex.h: Added parameter oned_matrix_p 19801 * oligoindex.c, oligoindex.h: Moved various functions from oligoindex.c to 20778 oligoindex. 21048 * oligoindex.h: Changed calls to reset oligoindex 21550 * oligoindex.c, oligoindex.h, stage2.c: Restored computation of 21563 * oligoindex.c, oligoindex.h: Computing diagonals inside 28227 * oligoindex.c, oligoindex.h: Simplified routines greatly. [all …]