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Searched refs:out_prefix (Results 1 – 25 of 227) sorted by relevance

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/dports/biology/p5-transdecoder/TransDecoder-TransDecoder-v5.4.0/util/
H A Dtrain_start_PWM.pl46 my $out_prefix;
53 'out_prefix=s' => \$out_prefix,
78 . " --out_prefix $out_prefix"
84 . " --features_plus $out_prefix.+.features "
85 . " --features_minus $out_prefix.-.features "
87 . " > $out_prefix.feature.scores";
91 …$cmd = "$utildir/feature_scores_to_ROC.pl $out_prefix.feature.scores > $out_prefix.feature.scores.…
113 . " --pwm_minus $out_prefix.-.pwm "
114 . " --out_prefix $out_prefix.enhanced";
123 . " > $out_prefix.enhanced.feature.scores";
[all …]
/dports/net/mpich/mpich-3.4.3/src/binding/fortran/use_mpi/
H A Dbuildiface42 $out_prefix="MPI_";
418 print MPIBASEFD " SUBROUTINE $out_prefix$ucname";
420 length(" SUBROUTINE $out_prefix$ucname"),
616 print MPIBASEFD " call ${out_prefix}$ucname";
618 length(" call ${out_prefix}$ucname"),
634 print MPIBASEFD " call ${out_prefix}$ucname";
636 length(" call ${out_prefix}$ucname"),
790 print MPIFD " PUBLIC :: ${out_prefix}$ucname\n";
791 print MPIFD " INTERFACE ${out_prefix}$ucname\n";
806 print MPIFD " SUBROUTINE ${out_prefix}${ucname}_T";
[all …]
/dports/biology/py-crossmap/CrossMap-0.5.4/lib/cmmodule/
H A Dmapwig.py41 OUT_FILE1 = open(out_prefix + '.bgr','w') # original bgr file
42 OUT_FILE2 = open(out_prefix + '.sorted.bgr','w') # sorted bgr file
43 OUT_FILE3 = pyBigWig.open(out_prefix + '.bw', "w") # bigwig file
67 os.remove(out_prefix + '.bgr') #remove .bgr, keep .sorted.bgr
77 logging.info("Writing header to \"%s\" ..." % (out_prefix + '.bw'))
81 logging.info("Writing entries to \"%s\" ..." % (out_prefix + '.bw'))
82 for line in ireader.reader(out_prefix + '.sorted.bgr'):
108 os.remove(out_prefix + '.bgr') #remove .bgr, keep .sorted.bgr
110 logging.info ("Writing header to \"%s\" ..." % (out_prefix + '.bw'))
123 logging.info("Writing entries to \"%s\" ..." % (out_prefix + '.bw'))
[all …]
/dports/x11/xdotool/xdotool-3.20210804.2/
H A Dcmd_getwindowgeometry.c10 char out_prefix[17] = {'\0'}; in cmd_getwindowgeometry() local
38 strncpy(out_prefix, optarg, sizeof(out_prefix)-1); in cmd_getwindowgeometry()
39 out_prefix[ sizeof(out_prefix)-1 ] = '\0'; //just in case in cmd_getwindowgeometry()
68 xdotool_output(context, "%sWINDOW=%ld", out_prefix, window); in cmd_getwindowgeometry()
69 xdotool_output(context, "%sX=%d", out_prefix, x); in cmd_getwindowgeometry()
70 xdotool_output(context, "%sY=%d", out_prefix, y); in cmd_getwindowgeometry()
71 xdotool_output(context, "%sWIDTH=%u", out_prefix, width); in cmd_getwindowgeometry()
72 xdotool_output(context, "%sHEIGHT=%u", out_prefix, height); in cmd_getwindowgeometry()
73 xdotool_output(context, "%sSCREEN=%d", out_prefix, XScreenNumberOfScreen(screen)); in cmd_getwindowgeometry()
H A Dcmd_getmouselocation.c22 char out_prefix[17] = {'\0'}; in cmd_getmouselocation() local
36 strncpy(out_prefix, optarg, sizeof(out_prefix)-1); in cmd_getmouselocation()
37 out_prefix[ sizeof(out_prefix)-1 ] = '\0'; //just in case in cmd_getmouselocation()
50 xdotool_output(context, "%sX=%d", out_prefix, x); in cmd_getmouselocation()
51 xdotool_output(context, "%sY=%d", out_prefix, y); in cmd_getmouselocation()
52 xdotool_output(context, "%sSCREEN=%d", out_prefix, screen_num); in cmd_getmouselocation()
53 xdotool_output(context, "%sWINDOW=%d", out_prefix, window); in cmd_getmouselocation()
/dports/devel/git-svn/git-2.34.1/t/valgrind/
H A Danalyze.sh25 output=$out_prefix.$count
40 cp $out_prefix.$count.message \
41 $out_prefix.$missing_message.message
56 echo "$i $(tr '\n' ' ' < $out_prefix.$i)"
68 cat $out_prefix.$number
73 cat $out_prefix.$number.message
/dports/devel/git-p4/git-2.34.1/t/valgrind/
H A Danalyze.sh25 output=$out_prefix.$count
40 cp $out_prefix.$count.message \
41 $out_prefix.$missing_message.message
56 echo "$i $(tr '\n' ' ' < $out_prefix.$i)"
68 cat $out_prefix.$number
73 cat $out_prefix.$number.message
/dports/devel/git-gui/git-2.34.1/t/valgrind/
H A Danalyze.sh25 output=$out_prefix.$count
40 cp $out_prefix.$count.message \
41 $out_prefix.$missing_message.message
56 echo "$i $(tr '\n' ' ' < $out_prefix.$i)"
68 cat $out_prefix.$number
73 cat $out_prefix.$number.message
/dports/devel/git/git-2.34.1/t/valgrind/
H A Danalyze.sh25 output=$out_prefix.$count
40 cp $out_prefix.$count.message \
41 $out_prefix.$missing_message.message
56 echo "$i $(tr '\n' ' ' < $out_prefix.$i)"
68 cat $out_prefix.$number
73 cat $out_prefix.$number.message
/dports/devel/git-cvs/git-2.34.1/t/valgrind/
H A Danalyze.sh25 output=$out_prefix.$count
40 cp $out_prefix.$count.message \
41 $out_prefix.$missing_message.message
56 echo "$i $(tr '\n' ' ' < $out_prefix.$i)"
68 cat $out_prefix.$number
73 cat $out_prefix.$number.message
/dports/devel/cgit/cgit-1.2.3/git/t/valgrind/
H A Danalyze.sh25 output=$out_prefix.$count
40 cp $out_prefix.$count.message \
41 $out_prefix.$missing_message.message
56 echo "$i $(tr '\n' ' ' < $out_prefix.$i)"
68 cat $out_prefix.$number
73 cat $out_prefix.$number.message
/dports/science/py-pymol/pymol-open-source-2.4.0/modules/chempy/tinker/
H A D__init__.py26 def do(command,in_prefix,run_prefix,out_prefix,tokens,capture=None): argument
38 for a in glob.glob(out_prefix+".*"):
72 dst = out_prefix+'.'+dst[len(dst)-1]
82 print(" "+str(__name__)+': creating output files "%s.*"' % (out_prefix))
88 def run(command,in_prefix,out_prefix,tokens,capture=None): argument
100 for a in glob.glob(out_prefix+".*"):
107 pipe = os.popen(bin_path+command+"> "+out_prefix+".out","w")
125 dst = out_prefix+'.'+dst[len(dst)-1]
132 print(" "+str(__name__)+': creating output files "%s.*"' % (out_prefix))
/dports/biology/p5-transdecoder/TransDecoder-TransDecoder-v5.4.0/util/PWM/
H A Dbuild_atgPWM_+-.pl45 my $out_prefix = undef;
53 'out_prefix=s' => \$out_prefix,
61 unless ($transcripts_file && $selected_orfs_file && $out_prefix) {
81 my $features_plus_file = "$out_prefix.+.features";
84 my $features_minus_file = "$out_prefix.-.features";
128 my $pwm_plus_file = "$out_prefix.+.pwm";
134 my $pwm_minus_file = "$out_prefix.-.pwm";
/dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/boringssl/src/ssl/
H A Dtls_record.cc401 out_prefix[0] = SSL3_RT_APPLICATION_DATA; in do_seal_record()
403 out_prefix[0] = type; in do_seal_record()
408 out_prefix[1] = record_version >> 8; in do_seal_record()
409 out_prefix[2] = record_version & 0xff; in do_seal_record()
410 out_prefix[3] = ciphertext_len >> 8; in do_seal_record()
411 out_prefix[4] = ciphertext_len & 0xff; in do_seal_record()
478 uint8_t *split_body = out_prefix + prefix_len; in tls_seal_scatter_record()
505 OPENSSL_memcpy(out_prefix + split_record_len, tmp_prefix, in tls_seal_scatter_record()
661 bool SealRecord(SSL *ssl, const Span<uint8_t> out_prefix, in SealRecord() argument
674 if (out_prefix.size() != SealRecordPrefixLen(ssl, in.size()) || in SealRecord()
[all …]
/dports/www/qt5-webengine/qtwebengine-everywhere-src-5.15.2/src/3rdparty/chromium/third_party/boringssl/src/ssl/
H A Dtls_record.cc401 out_prefix[0] = SSL3_RT_APPLICATION_DATA; in do_seal_record()
403 out_prefix[0] = type; in do_seal_record()
408 out_prefix[1] = record_version >> 8; in do_seal_record()
409 out_prefix[2] = record_version & 0xff; in do_seal_record()
410 out_prefix[3] = ciphertext_len >> 8; in do_seal_record()
411 out_prefix[4] = ciphertext_len & 0xff; in do_seal_record()
476 uint8_t *split_body = out_prefix + prefix_len; in tls_seal_scatter_record()
503 OPENSSL_memcpy(out_prefix + split_record_len, tmp_prefix, in tls_seal_scatter_record()
659 bool SealRecord(SSL *ssl, const Span<uint8_t> out_prefix, in SealRecord() argument
672 if (out_prefix.size() != SealRecordPrefixLen(ssl, in.size()) || in SealRecord()
[all …]
/dports/net/quiche/quiche-0.9.0/cargo-crates/boring-sys-1.1.1/deps/boringssl/src/ssl/
H A Dtls_record.cc401 out_prefix[0] = SSL3_RT_APPLICATION_DATA; in do_seal_record()
403 out_prefix[0] = type; in do_seal_record()
408 out_prefix[1] = record_version >> 8; in do_seal_record()
409 out_prefix[2] = record_version & 0xff; in do_seal_record()
410 out_prefix[3] = ciphertext_len >> 8; in do_seal_record()
411 out_prefix[4] = ciphertext_len & 0xff; in do_seal_record()
478 uint8_t *split_body = out_prefix + prefix_len; in tls_seal_scatter_record()
505 OPENSSL_memcpy(out_prefix + split_record_len, tmp_prefix, in tls_seal_scatter_record()
661 bool SealRecord(SSL *ssl, const Span<uint8_t> out_prefix, in SealRecord() argument
674 if (out_prefix.size() != SealRecordPrefixLen(ssl, in.size()) || in SealRecord()
[all …]
/dports/net/quiche/quiche-0.9.0/deps/boringssl/src/ssl/
H A Dtls_record.cc401 out_prefix[0] = SSL3_RT_APPLICATION_DATA; in do_seal_record()
403 out_prefix[0] = type; in do_seal_record()
408 out_prefix[1] = record_version >> 8; in do_seal_record()
409 out_prefix[2] = record_version & 0xff; in do_seal_record()
410 out_prefix[3] = ciphertext_len >> 8; in do_seal_record()
411 out_prefix[4] = ciphertext_len & 0xff; in do_seal_record()
478 uint8_t *split_body = out_prefix + prefix_len; in tls_seal_scatter_record()
505 OPENSSL_memcpy(out_prefix + split_record_len, tmp_prefix, in tls_seal_scatter_record()
661 bool SealRecord(SSL *ssl, const Span<uint8_t> out_prefix, in SealRecord() argument
674 if (out_prefix.size() != SealRecordPrefixLen(ssl, in.size()) || in SealRecord()
[all …]
/dports/security/boringssl/boringssl-6a71840/ssl/
H A Dtls_record.cc401 out_prefix[0] = SSL3_RT_APPLICATION_DATA; in do_seal_record()
403 out_prefix[0] = type; in do_seal_record()
408 out_prefix[1] = record_version >> 8; in do_seal_record()
409 out_prefix[2] = record_version & 0xff; in do_seal_record()
410 out_prefix[3] = ciphertext_len >> 8; in do_seal_record()
411 out_prefix[4] = ciphertext_len & 0xff; in do_seal_record()
476 uint8_t *split_body = out_prefix + prefix_len; in tls_seal_scatter_record()
503 OPENSSL_memcpy(out_prefix + split_record_len, tmp_prefix, in tls_seal_scatter_record()
659 bool SealRecord(SSL *ssl, const Span<uint8_t> out_prefix, in SealRecord() argument
672 if (out_prefix.size() != SealRecordPrefixLen(ssl, in.size()) || in SealRecord()
[all …]
/dports/devel/pecl-grpc/grpc-1.42.0/third_party/boringssl-with-bazel/src/ssl/
H A Dtls_record.cc401 out_prefix[0] = SSL3_RT_APPLICATION_DATA; in do_seal_record()
403 out_prefix[0] = type; in do_seal_record()
408 out_prefix[1] = record_version >> 8; in do_seal_record()
409 out_prefix[2] = record_version & 0xff; in do_seal_record()
410 out_prefix[3] = ciphertext_len >> 8; in do_seal_record()
411 out_prefix[4] = ciphertext_len & 0xff; in do_seal_record()
478 uint8_t *split_body = out_prefix + prefix_len; in tls_seal_scatter_record()
505 OPENSSL_memcpy(out_prefix + split_record_len, tmp_prefix, in tls_seal_scatter_record()
661 bool SealRecord(SSL *ssl, const Span<uint8_t> out_prefix, in SealRecord() argument
674 if (out_prefix.size() != SealRecordPrefixLen(ssl, in.size()) || in SealRecord()
[all …]
/dports/devel/py-grpcio/grpcio-1.43.0/third_party/boringssl-with-bazel/src/ssl/
H A Dtls_record.cc401 out_prefix[0] = SSL3_RT_APPLICATION_DATA; in do_seal_record()
403 out_prefix[0] = type; in do_seal_record()
408 out_prefix[1] = record_version >> 8; in do_seal_record()
409 out_prefix[2] = record_version & 0xff; in do_seal_record()
410 out_prefix[3] = ciphertext_len >> 8; in do_seal_record()
411 out_prefix[4] = ciphertext_len & 0xff; in do_seal_record()
478 uint8_t *split_body = out_prefix + prefix_len; in tls_seal_scatter_record()
505 OPENSSL_memcpy(out_prefix + split_record_len, tmp_prefix, in tls_seal_scatter_record()
661 bool SealRecord(SSL *ssl, const Span<uint8_t> out_prefix, in SealRecord() argument
674 if (out_prefix.size() != SealRecordPrefixLen(ssl, in.size()) || in SealRecord()
[all …]
/dports/science/afni/afni-AFNI_21.3.16/src/python_scripts/scripts/
H A Dalign_epi_anat.py1296 ("%s" % (e.out_prefix())), \
1297 ("%s" % (a.out_prefix())), rmold = rmold, \
1596 " %s " % anat_tlrc.out_prefix())
2066 (o.p(), ps.anat0.out_prefix(), suf)
2075 ow = a.new("%s%s_wtal" % (a.out_prefix(), suf))
2151 (a.p(), ps.anat0.out_prefix(),suf)
2747 o = a.new("%s%s" % (a.out_prefix(), suffix))
2919 ots = e.new("%s_vrt" % o.out_prefix())
3129 basename = o.out_prefix()
3139 basename = o.out_prefix()
[all …]
/dports/biology/iqtree/IQ-TREE-2.0.6/main/
H A Dphyloanalysis.cpp1984 str = params.out_prefix; in printMiscInfo()
4042 string prefix = (params.out_prefix) ? params.out_prefix : params.user_file; in assignBranchSupportNew()
4275 if (out_prefix) in assignBootstrapSupport()
4276 out_file = out_prefix; in assignBootstrapSupport()
4401 if (out_prefix) in computeConsensusTree()
4402 out_file = out_prefix; in computeConsensusTree()
4417 if (out_prefix) in computeConsensusTree()
4418 out_file = out_prefix; in computeConsensusTree()
4451 if (out_prefix) in computeConsensusNetwork()
4452 out_file = out_prefix; in computeConsensusNetwork()
[all …]
/dports/net/mpich2/mpich2-1.5/src/binding/f77/
H A Dbuildiface1093 my $out_prefix = shift;
1130 my $out_prefix = shift;
1135 my $ucprefix = uc($out_prefix);
1136 my $lcprefix = lc($out_prefix);
1227 my $out_prefix = shift;
1231 my $lcprefix = lc($out_prefix);
1232 my $ucprefix = uc($out_prefix);
3872 my $out_prefix = shift;
4886 my ($out_prefix, $funcname,$args) = @_;
5283 my $ucprefix = uc($out_prefix);
[all …]
/dports/biology/p5-transdecoder/TransDecoder-TransDecoder-v5.4.0/util/PWM/__deprecated/
H A Dbuild_atgPWM.pl43 my $out_prefix = undef;
51 'out_prefix=s' => \$out_prefix,
59 unless ($transcripts_file && $train_gff3_file && $out_prefix) {
76 my $features_file = "$out_prefix.features";
114 my $pwm_file = "$out_prefix.pwm";
/dports/japanese/freepwing/freepwing-1.4.4/doc/
H A Dhtml-split66 my $out_prefix;
95 $out_prefix = $options{p};
97 $out_prefix = basename($in_file, '.htm', '.html');
216 return sprintf("%s.%s", $out_prefix, $out_suffix);
219 $out_prefix, $n, $out_suffix);

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