/dports/biology/p5-transdecoder/TransDecoder-TransDecoder-v5.4.0/util/ |
H A D | train_start_PWM.pl | 46 my $out_prefix; 53 'out_prefix=s' => \$out_prefix, 78 . " --out_prefix $out_prefix" 84 . " --features_plus $out_prefix.+.features " 85 . " --features_minus $out_prefix.-.features " 87 . " > $out_prefix.feature.scores"; 91 …$cmd = "$utildir/feature_scores_to_ROC.pl $out_prefix.feature.scores > $out_prefix.feature.scores.… 113 . " --pwm_minus $out_prefix.-.pwm " 114 . " --out_prefix $out_prefix.enhanced"; 123 . " > $out_prefix.enhanced.feature.scores"; [all …]
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/dports/net/mpich/mpich-3.4.3/src/binding/fortran/use_mpi/ |
H A D | buildiface | 42 $out_prefix="MPI_"; 418 print MPIBASEFD " SUBROUTINE $out_prefix$ucname"; 420 length(" SUBROUTINE $out_prefix$ucname"), 616 print MPIBASEFD " call ${out_prefix}$ucname"; 618 length(" call ${out_prefix}$ucname"), 634 print MPIBASEFD " call ${out_prefix}$ucname"; 636 length(" call ${out_prefix}$ucname"), 790 print MPIFD " PUBLIC :: ${out_prefix}$ucname\n"; 791 print MPIFD " INTERFACE ${out_prefix}$ucname\n"; 806 print MPIFD " SUBROUTINE ${out_prefix}${ucname}_T"; [all …]
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/dports/biology/py-crossmap/CrossMap-0.5.4/lib/cmmodule/ |
H A D | mapwig.py | 41 OUT_FILE1 = open(out_prefix + '.bgr','w') # original bgr file 42 OUT_FILE2 = open(out_prefix + '.sorted.bgr','w') # sorted bgr file 43 OUT_FILE3 = pyBigWig.open(out_prefix + '.bw', "w") # bigwig file 67 os.remove(out_prefix + '.bgr') #remove .bgr, keep .sorted.bgr 77 logging.info("Writing header to \"%s\" ..." % (out_prefix + '.bw')) 81 logging.info("Writing entries to \"%s\" ..." % (out_prefix + '.bw')) 82 for line in ireader.reader(out_prefix + '.sorted.bgr'): 108 os.remove(out_prefix + '.bgr') #remove .bgr, keep .sorted.bgr 110 logging.info ("Writing header to \"%s\" ..." % (out_prefix + '.bw')) 123 logging.info("Writing entries to \"%s\" ..." % (out_prefix + '.bw')) [all …]
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/dports/x11/xdotool/xdotool-3.20210804.2/ |
H A D | cmd_getwindowgeometry.c | 10 char out_prefix[17] = {'\0'}; in cmd_getwindowgeometry() local 38 strncpy(out_prefix, optarg, sizeof(out_prefix)-1); in cmd_getwindowgeometry() 39 out_prefix[ sizeof(out_prefix)-1 ] = '\0'; //just in case in cmd_getwindowgeometry() 68 xdotool_output(context, "%sWINDOW=%ld", out_prefix, window); in cmd_getwindowgeometry() 69 xdotool_output(context, "%sX=%d", out_prefix, x); in cmd_getwindowgeometry() 70 xdotool_output(context, "%sY=%d", out_prefix, y); in cmd_getwindowgeometry() 71 xdotool_output(context, "%sWIDTH=%u", out_prefix, width); in cmd_getwindowgeometry() 72 xdotool_output(context, "%sHEIGHT=%u", out_prefix, height); in cmd_getwindowgeometry() 73 xdotool_output(context, "%sSCREEN=%d", out_prefix, XScreenNumberOfScreen(screen)); in cmd_getwindowgeometry()
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H A D | cmd_getmouselocation.c | 22 char out_prefix[17] = {'\0'}; in cmd_getmouselocation() local 36 strncpy(out_prefix, optarg, sizeof(out_prefix)-1); in cmd_getmouselocation() 37 out_prefix[ sizeof(out_prefix)-1 ] = '\0'; //just in case in cmd_getmouselocation() 50 xdotool_output(context, "%sX=%d", out_prefix, x); in cmd_getmouselocation() 51 xdotool_output(context, "%sY=%d", out_prefix, y); in cmd_getmouselocation() 52 xdotool_output(context, "%sSCREEN=%d", out_prefix, screen_num); in cmd_getmouselocation() 53 xdotool_output(context, "%sWINDOW=%d", out_prefix, window); in cmd_getmouselocation()
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/dports/devel/git-svn/git-2.34.1/t/valgrind/ |
H A D | analyze.sh | 25 output=$out_prefix.$count 40 cp $out_prefix.$count.message \ 41 $out_prefix.$missing_message.message 56 echo "$i $(tr '\n' ' ' < $out_prefix.$i)" 68 cat $out_prefix.$number 73 cat $out_prefix.$number.message
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/dports/devel/git-p4/git-2.34.1/t/valgrind/ |
H A D | analyze.sh | 25 output=$out_prefix.$count 40 cp $out_prefix.$count.message \ 41 $out_prefix.$missing_message.message 56 echo "$i $(tr '\n' ' ' < $out_prefix.$i)" 68 cat $out_prefix.$number 73 cat $out_prefix.$number.message
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/dports/devel/git-gui/git-2.34.1/t/valgrind/ |
H A D | analyze.sh | 25 output=$out_prefix.$count 40 cp $out_prefix.$count.message \ 41 $out_prefix.$missing_message.message 56 echo "$i $(tr '\n' ' ' < $out_prefix.$i)" 68 cat $out_prefix.$number 73 cat $out_prefix.$number.message
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/dports/devel/git/git-2.34.1/t/valgrind/ |
H A D | analyze.sh | 25 output=$out_prefix.$count 40 cp $out_prefix.$count.message \ 41 $out_prefix.$missing_message.message 56 echo "$i $(tr '\n' ' ' < $out_prefix.$i)" 68 cat $out_prefix.$number 73 cat $out_prefix.$number.message
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/dports/devel/git-cvs/git-2.34.1/t/valgrind/ |
H A D | analyze.sh | 25 output=$out_prefix.$count 40 cp $out_prefix.$count.message \ 41 $out_prefix.$missing_message.message 56 echo "$i $(tr '\n' ' ' < $out_prefix.$i)" 68 cat $out_prefix.$number 73 cat $out_prefix.$number.message
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/dports/devel/cgit/cgit-1.2.3/git/t/valgrind/ |
H A D | analyze.sh | 25 output=$out_prefix.$count 40 cp $out_prefix.$count.message \ 41 $out_prefix.$missing_message.message 56 echo "$i $(tr '\n' ' ' < $out_prefix.$i)" 68 cat $out_prefix.$number 73 cat $out_prefix.$number.message
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/dports/science/py-pymol/pymol-open-source-2.4.0/modules/chempy/tinker/ |
H A D | __init__.py | 26 def do(command,in_prefix,run_prefix,out_prefix,tokens,capture=None): argument 38 for a in glob.glob(out_prefix+".*"): 72 dst = out_prefix+'.'+dst[len(dst)-1] 82 print(" "+str(__name__)+': creating output files "%s.*"' % (out_prefix)) 88 def run(command,in_prefix,out_prefix,tokens,capture=None): argument 100 for a in glob.glob(out_prefix+".*"): 107 pipe = os.popen(bin_path+command+"> "+out_prefix+".out","w") 125 dst = out_prefix+'.'+dst[len(dst)-1] 132 print(" "+str(__name__)+': creating output files "%s.*"' % (out_prefix))
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/dports/biology/p5-transdecoder/TransDecoder-TransDecoder-v5.4.0/util/PWM/ |
H A D | build_atgPWM_+-.pl | 45 my $out_prefix = undef; 53 'out_prefix=s' => \$out_prefix, 61 unless ($transcripts_file && $selected_orfs_file && $out_prefix) { 81 my $features_plus_file = "$out_prefix.+.features"; 84 my $features_minus_file = "$out_prefix.-.features"; 128 my $pwm_plus_file = "$out_prefix.+.pwm"; 134 my $pwm_minus_file = "$out_prefix.-.pwm";
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/dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/boringssl/src/ssl/ |
H A D | tls_record.cc | 401 out_prefix[0] = SSL3_RT_APPLICATION_DATA; in do_seal_record() 403 out_prefix[0] = type; in do_seal_record() 408 out_prefix[1] = record_version >> 8; in do_seal_record() 409 out_prefix[2] = record_version & 0xff; in do_seal_record() 410 out_prefix[3] = ciphertext_len >> 8; in do_seal_record() 411 out_prefix[4] = ciphertext_len & 0xff; in do_seal_record() 478 uint8_t *split_body = out_prefix + prefix_len; in tls_seal_scatter_record() 505 OPENSSL_memcpy(out_prefix + split_record_len, tmp_prefix, in tls_seal_scatter_record() 661 bool SealRecord(SSL *ssl, const Span<uint8_t> out_prefix, in SealRecord() argument 674 if (out_prefix.size() != SealRecordPrefixLen(ssl, in.size()) || in SealRecord() [all …]
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/dports/www/qt5-webengine/qtwebengine-everywhere-src-5.15.2/src/3rdparty/chromium/third_party/boringssl/src/ssl/ |
H A D | tls_record.cc | 401 out_prefix[0] = SSL3_RT_APPLICATION_DATA; in do_seal_record() 403 out_prefix[0] = type; in do_seal_record() 408 out_prefix[1] = record_version >> 8; in do_seal_record() 409 out_prefix[2] = record_version & 0xff; in do_seal_record() 410 out_prefix[3] = ciphertext_len >> 8; in do_seal_record() 411 out_prefix[4] = ciphertext_len & 0xff; in do_seal_record() 476 uint8_t *split_body = out_prefix + prefix_len; in tls_seal_scatter_record() 503 OPENSSL_memcpy(out_prefix + split_record_len, tmp_prefix, in tls_seal_scatter_record() 659 bool SealRecord(SSL *ssl, const Span<uint8_t> out_prefix, in SealRecord() argument 672 if (out_prefix.size() != SealRecordPrefixLen(ssl, in.size()) || in SealRecord() [all …]
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/dports/net/quiche/quiche-0.9.0/cargo-crates/boring-sys-1.1.1/deps/boringssl/src/ssl/ |
H A D | tls_record.cc | 401 out_prefix[0] = SSL3_RT_APPLICATION_DATA; in do_seal_record() 403 out_prefix[0] = type; in do_seal_record() 408 out_prefix[1] = record_version >> 8; in do_seal_record() 409 out_prefix[2] = record_version & 0xff; in do_seal_record() 410 out_prefix[3] = ciphertext_len >> 8; in do_seal_record() 411 out_prefix[4] = ciphertext_len & 0xff; in do_seal_record() 478 uint8_t *split_body = out_prefix + prefix_len; in tls_seal_scatter_record() 505 OPENSSL_memcpy(out_prefix + split_record_len, tmp_prefix, in tls_seal_scatter_record() 661 bool SealRecord(SSL *ssl, const Span<uint8_t> out_prefix, in SealRecord() argument 674 if (out_prefix.size() != SealRecordPrefixLen(ssl, in.size()) || in SealRecord() [all …]
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/dports/net/quiche/quiche-0.9.0/deps/boringssl/src/ssl/ |
H A D | tls_record.cc | 401 out_prefix[0] = SSL3_RT_APPLICATION_DATA; in do_seal_record() 403 out_prefix[0] = type; in do_seal_record() 408 out_prefix[1] = record_version >> 8; in do_seal_record() 409 out_prefix[2] = record_version & 0xff; in do_seal_record() 410 out_prefix[3] = ciphertext_len >> 8; in do_seal_record() 411 out_prefix[4] = ciphertext_len & 0xff; in do_seal_record() 478 uint8_t *split_body = out_prefix + prefix_len; in tls_seal_scatter_record() 505 OPENSSL_memcpy(out_prefix + split_record_len, tmp_prefix, in tls_seal_scatter_record() 661 bool SealRecord(SSL *ssl, const Span<uint8_t> out_prefix, in SealRecord() argument 674 if (out_prefix.size() != SealRecordPrefixLen(ssl, in.size()) || in SealRecord() [all …]
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/dports/security/boringssl/boringssl-6a71840/ssl/ |
H A D | tls_record.cc | 401 out_prefix[0] = SSL3_RT_APPLICATION_DATA; in do_seal_record() 403 out_prefix[0] = type; in do_seal_record() 408 out_prefix[1] = record_version >> 8; in do_seal_record() 409 out_prefix[2] = record_version & 0xff; in do_seal_record() 410 out_prefix[3] = ciphertext_len >> 8; in do_seal_record() 411 out_prefix[4] = ciphertext_len & 0xff; in do_seal_record() 476 uint8_t *split_body = out_prefix + prefix_len; in tls_seal_scatter_record() 503 OPENSSL_memcpy(out_prefix + split_record_len, tmp_prefix, in tls_seal_scatter_record() 659 bool SealRecord(SSL *ssl, const Span<uint8_t> out_prefix, in SealRecord() argument 672 if (out_prefix.size() != SealRecordPrefixLen(ssl, in.size()) || in SealRecord() [all …]
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/dports/devel/pecl-grpc/grpc-1.42.0/third_party/boringssl-with-bazel/src/ssl/ |
H A D | tls_record.cc | 401 out_prefix[0] = SSL3_RT_APPLICATION_DATA; in do_seal_record() 403 out_prefix[0] = type; in do_seal_record() 408 out_prefix[1] = record_version >> 8; in do_seal_record() 409 out_prefix[2] = record_version & 0xff; in do_seal_record() 410 out_prefix[3] = ciphertext_len >> 8; in do_seal_record() 411 out_prefix[4] = ciphertext_len & 0xff; in do_seal_record() 478 uint8_t *split_body = out_prefix + prefix_len; in tls_seal_scatter_record() 505 OPENSSL_memcpy(out_prefix + split_record_len, tmp_prefix, in tls_seal_scatter_record() 661 bool SealRecord(SSL *ssl, const Span<uint8_t> out_prefix, in SealRecord() argument 674 if (out_prefix.size() != SealRecordPrefixLen(ssl, in.size()) || in SealRecord() [all …]
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/dports/devel/py-grpcio/grpcio-1.43.0/third_party/boringssl-with-bazel/src/ssl/ |
H A D | tls_record.cc | 401 out_prefix[0] = SSL3_RT_APPLICATION_DATA; in do_seal_record() 403 out_prefix[0] = type; in do_seal_record() 408 out_prefix[1] = record_version >> 8; in do_seal_record() 409 out_prefix[2] = record_version & 0xff; in do_seal_record() 410 out_prefix[3] = ciphertext_len >> 8; in do_seal_record() 411 out_prefix[4] = ciphertext_len & 0xff; in do_seal_record() 478 uint8_t *split_body = out_prefix + prefix_len; in tls_seal_scatter_record() 505 OPENSSL_memcpy(out_prefix + split_record_len, tmp_prefix, in tls_seal_scatter_record() 661 bool SealRecord(SSL *ssl, const Span<uint8_t> out_prefix, in SealRecord() argument 674 if (out_prefix.size() != SealRecordPrefixLen(ssl, in.size()) || in SealRecord() [all …]
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/dports/science/afni/afni-AFNI_21.3.16/src/python_scripts/scripts/ |
H A D | align_epi_anat.py | 1296 ("%s" % (e.out_prefix())), \ 1297 ("%s" % (a.out_prefix())), rmold = rmold, \ 1596 " %s " % anat_tlrc.out_prefix()) 2066 (o.p(), ps.anat0.out_prefix(), suf) 2075 ow = a.new("%s%s_wtal" % (a.out_prefix(), suf)) 2151 (a.p(), ps.anat0.out_prefix(),suf) 2747 o = a.new("%s%s" % (a.out_prefix(), suffix)) 2919 ots = e.new("%s_vrt" % o.out_prefix()) 3129 basename = o.out_prefix() 3139 basename = o.out_prefix() [all …]
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/dports/biology/iqtree/IQ-TREE-2.0.6/main/ |
H A D | phyloanalysis.cpp | 1984 str = params.out_prefix; in printMiscInfo() 4042 string prefix = (params.out_prefix) ? params.out_prefix : params.user_file; in assignBranchSupportNew() 4275 if (out_prefix) in assignBootstrapSupport() 4276 out_file = out_prefix; in assignBootstrapSupport() 4401 if (out_prefix) in computeConsensusTree() 4402 out_file = out_prefix; in computeConsensusTree() 4417 if (out_prefix) in computeConsensusTree() 4418 out_file = out_prefix; in computeConsensusTree() 4451 if (out_prefix) in computeConsensusNetwork() 4452 out_file = out_prefix; in computeConsensusNetwork() [all …]
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/dports/net/mpich2/mpich2-1.5/src/binding/f77/ |
H A D | buildiface | 1093 my $out_prefix = shift; 1130 my $out_prefix = shift; 1135 my $ucprefix = uc($out_prefix); 1136 my $lcprefix = lc($out_prefix); 1227 my $out_prefix = shift; 1231 my $lcprefix = lc($out_prefix); 1232 my $ucprefix = uc($out_prefix); 3872 my $out_prefix = shift; 4886 my ($out_prefix, $funcname,$args) = @_; 5283 my $ucprefix = uc($out_prefix); [all …]
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/dports/biology/p5-transdecoder/TransDecoder-TransDecoder-v5.4.0/util/PWM/__deprecated/ |
H A D | build_atgPWM.pl | 43 my $out_prefix = undef; 51 'out_prefix=s' => \$out_prefix, 59 unless ($transcripts_file && $train_gff3_file && $out_prefix) { 76 my $features_file = "$out_prefix.features"; 114 my $pwm_file = "$out_prefix.pwm";
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/dports/japanese/freepwing/freepwing-1.4.4/doc/ |
H A D | html-split | 66 my $out_prefix; 95 $out_prefix = $options{p}; 97 $out_prefix = basename($in_file, '.htm', '.html'); 216 return sprintf("%s.%s", $out_prefix, $out_suffix); 219 $out_prefix, $n, $out_suffix);
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