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Name Date Size #Lines LOC

..03-May-2022-

PWM/H17-Oct-2018-1,407877

__pwm_tests/H03-May-2022-2310

bin/H07-May-2022-

misc/H17-Oct-2018-576311

cdna_alignment_orf_to_genome_orf.plH A D03-May-202211.3 KiB400234

compute_base_probs.plH A D03-May-20221.3 KiB6841

exclude_similar_proteins.plH A D03-May-20223.4 KiB11979

fasta_prot_checker.plH A D03-May-20221,014 5836

ffindex_resume.plH A D03-May-20221,012 5239

gene_list_to_gff.plH A D03-May-2022813 4324

get_FL_accs.plH A D03-May-2022646 3222

get_longest_ORF_per_transcript.plH A D03-May-20221.3 KiB6438

get_top_longest_fasta_entries.plH A D03-May-2022988 5533

gff3_file_to_bed.plH A D03-May-2022922 4425

gff3_file_to_proteins.plH A D03-May-20224.4 KiB161113

gff3_gene_to_gtf_format.plH A D03-May-20221.8 KiB6638

gtf_genome_to_cdna_fasta.plH A D03-May-20222.5 KiB11467

gtf_to_alignment_gff3.plH A D03-May-20222.1 KiB10158

gtf_to_bed.plH A D03-May-20222 KiB10059

nr_ORFs_gff3.plH A D03-May-20221.6 KiB7542

pfam_mpi.pbsH A D03-May-2022960 2813

pfam_runner.plH A D03-May-20229.1 KiB309235

refine_gff3_group_iso_strip_utrs.plH A D03-May-20221 KiB5330

refine_hexamer_scores.plH A D03-May-20221.8 KiB7345

remove_eclipsed_ORFs.plH A D03-May-20222.5 KiB9452

score_CDS_likelihood_all_6_frames.plH A D03-May-20223.1 KiB14581

select_best_ORFs_per_transcript.plH A D03-May-20229.9 KiB376255

seq_n_baseprobs_to_loglikelihood_vals.plH A D03-May-20223.8 KiB15389

start_codon_refinement.plH A D03-May-20229.6 KiB327220

train_start_PWM.plH A D03-May-20224.4 KiB14896

uri_unescape.plH A D03-May-2022116 137