| .. | | 03-May-2022 | - |
| PWM/ | H | 17-Oct-2018 | - | 1,407 | 877 |
| __pwm_tests/ | H | 03-May-2022 | - | 23 | 10 |
| bin/ | H | 07-May-2022 | - | | |
| misc/ | H | 17-Oct-2018 | - | 576 | 311 |
| cdna_alignment_orf_to_genome_orf.pl | H A D | 03-May-2022 | 11.3 KiB | 400 | 234 |
| compute_base_probs.pl | H A D | 03-May-2022 | 1.3 KiB | 68 | 41 |
| exclude_similar_proteins.pl | H A D | 03-May-2022 | 3.4 KiB | 119 | 79 |
| fasta_prot_checker.pl | H A D | 03-May-2022 | 1,014 | 58 | 36 |
| ffindex_resume.pl | H A D | 03-May-2022 | 1,012 | 52 | 39 |
| gene_list_to_gff.pl | H A D | 03-May-2022 | 813 | 43 | 24 |
| get_FL_accs.pl | H A D | 03-May-2022 | 646 | 32 | 22 |
| get_longest_ORF_per_transcript.pl | H A D | 03-May-2022 | 1.3 KiB | 64 | 38 |
| get_top_longest_fasta_entries.pl | H A D | 03-May-2022 | 988 | 55 | 33 |
| gff3_file_to_bed.pl | H A D | 03-May-2022 | 922 | 44 | 25 |
| gff3_file_to_proteins.pl | H A D | 03-May-2022 | 4.4 KiB | 161 | 113 |
| gff3_gene_to_gtf_format.pl | H A D | 03-May-2022 | 1.8 KiB | 66 | 38 |
| gtf_genome_to_cdna_fasta.pl | H A D | 03-May-2022 | 2.5 KiB | 114 | 67 |
| gtf_to_alignment_gff3.pl | H A D | 03-May-2022 | 2.1 KiB | 101 | 58 |
| gtf_to_bed.pl | H A D | 03-May-2022 | 2 KiB | 100 | 59 |
| nr_ORFs_gff3.pl | H A D | 03-May-2022 | 1.6 KiB | 75 | 42 |
| pfam_mpi.pbs | H A D | 03-May-2022 | 960 | 28 | 13 |
| pfam_runner.pl | H A D | 03-May-2022 | 9.1 KiB | 309 | 235 |
| refine_gff3_group_iso_strip_utrs.pl | H A D | 03-May-2022 | 1 KiB | 53 | 30 |
| refine_hexamer_scores.pl | H A D | 03-May-2022 | 1.8 KiB | 73 | 45 |
| remove_eclipsed_ORFs.pl | H A D | 03-May-2022 | 2.5 KiB | 94 | 52 |
| score_CDS_likelihood_all_6_frames.pl | H A D | 03-May-2022 | 3.1 KiB | 145 | 81 |
| select_best_ORFs_per_transcript.pl | H A D | 03-May-2022 | 9.9 KiB | 376 | 255 |
| seq_n_baseprobs_to_loglikelihood_vals.pl | H A D | 03-May-2022 | 3.8 KiB | 153 | 89 |
| start_codon_refinement.pl | H A D | 03-May-2022 | 9.6 KiB | 327 | 220 |
| train_start_PWM.pl | H A D | 03-May-2022 | 4.4 KiB | 148 | 96 |
| uri_unescape.pl | H A D | 03-May-2022 | 116 | 13 | 7 |