/dports/emulators/qemu60/qemu-6.0.0/roms/edk2/MdeModulePkg/Library/BrotliCustomDecompressLib/brotli/research/ |
H A D | dictionary_generator.cc | 134 size_t overlapLen = 0; in main() local 247 overlapLen = readInt(arg2); in main() 248 if (overlapLen < 0 || overlapLen > INT_MAX) { in main() 275 } else if (chunkLen <= overlapLen) { in main() 282 chunkStart += chunkLen - overlapLen) { in main()
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/dports/emulators/qemu60/qemu-6.0.0/roms/edk2/BaseTools/Source/C/BrotliCompress/brotli/research/ |
H A D | dictionary_generator.cc | 134 size_t overlapLen = 0; in main() local 247 overlapLen = readInt(arg2); in main() 248 if (overlapLen < 0 || overlapLen > INT_MAX) { in main() 275 } else if (chunkLen <= overlapLen) { in main() 282 chunkStart += chunkLen - overlapLen) { in main()
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/dports/emulators/qemu/qemu-6.2.0/roms/edk2/BaseTools/Source/C/BrotliCompress/brotli/research/ |
H A D | dictionary_generator.cc | 134 size_t overlapLen = 0; in main() local 247 overlapLen = readInt(arg2); in main() 248 if (overlapLen < 0 || overlapLen > INT_MAX) { in main() 275 } else if (chunkLen <= overlapLen) { in main() 282 chunkStart += chunkLen - overlapLen) { in main()
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/dports/emulators/qemu5/qemu-5.2.0/roms/edk2/MdeModulePkg/Library/BrotliCustomDecompressLib/brotli/research/ |
H A D | dictionary_generator.cc | 134 size_t overlapLen = 0; in main() local 247 overlapLen = readInt(arg2); in main() 248 if (overlapLen < 0 || overlapLen > INT_MAX) { in main() 275 } else if (chunkLen <= overlapLen) { in main() 282 chunkStart += chunkLen - overlapLen) { in main()
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/dports/emulators/qemu5/qemu-5.2.0/roms/edk2/BaseTools/Source/C/BrotliCompress/brotli/research/ |
H A D | dictionary_generator.cc | 134 size_t overlapLen = 0; in main() local 247 overlapLen = readInt(arg2); in main() 248 if (overlapLen < 0 || overlapLen > INT_MAX) { in main() 275 } else if (chunkLen <= overlapLen) { in main() 282 chunkStart += chunkLen - overlapLen) { in main()
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/dports/sysutils/uefi-edk2-bhyve/edk2-edk2-stable202102/BaseTools/Source/C/BrotliCompress/brotli/research/ |
H A D | dictionary_generator.cc | 134 size_t overlapLen = 0; in main() local 247 overlapLen = readInt(arg2); in main() 248 if (overlapLen < 0 || overlapLen > INT_MAX) { in main() 275 } else if (chunkLen <= overlapLen) { in main() 282 chunkStart += chunkLen - overlapLen) { in main()
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/dports/sysutils/uefi-edk2-bhyve/edk2-edk2-stable202102/MdeModulePkg/Library/BrotliCustomDecompressLib/brotli/research/ |
H A D | dictionary_generator.cc | 134 size_t overlapLen = 0; in main() local 247 overlapLen = readInt(arg2); in main() 248 if (overlapLen < 0 || overlapLen > INT_MAX) { in main() 275 } else if (chunkLen <= overlapLen) { in main() 282 chunkStart += chunkLen - overlapLen) { in main()
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/dports/emulators/qemu/qemu-6.2.0/roms/edk2/MdeModulePkg/Library/BrotliCustomDecompressLib/brotli/research/ |
H A D | dictionary_generator.cc | 134 size_t overlapLen = 0; in main() local 247 overlapLen = readInt(arg2); in main() 248 if (overlapLen < 0 || overlapLen > INT_MAX) { in main() 275 } else if (chunkLen <= overlapLen) { in main() 282 chunkStart += chunkLen - overlapLen) { in main()
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/dports/sysutils/edk2/edk2-edk2-stable202102/MdeModulePkg/Library/BrotliCustomDecompressLib/brotli/research/ |
H A D | dictionary_generator.cc | 134 size_t overlapLen = 0; in poisonData() 247 overlapLen = readInt(arg2); in poisonData() 248 if (overlapLen < 0 || overlapLen > INT_MAX) { in poisonData() 275 } else if (chunkLen <= overlapLen) { in poisonData() 282 chunkStart += chunkLen - overlapLen) { in poisonData()
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/dports/sysutils/edk2/edk2-edk2-stable202102/BaseTools/Source/C/BrotliCompress/brotli/research/ |
H A D | dictionary_generator.cc | 134 size_t overlapLen = 0; 247 overlapLen = readInt(arg2); 248 if (overlapLen < 0 || overlapLen > INT_MAX) { 275 } else if (chunkLen <= overlapLen) { in addPltSymbols() 282 chunkStart += chunkLen - overlapLen) {
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/dports/biology/seqan1/seqan-1.3.1/seqan/consensus/ |
H A D | consensus_library.h | 437 TSize overlapLen = 0; in appendSegmentMatches() local 439 …if (from != to) getAlignmentStatistics(matches, pairSet, from, to, matchLen, overlapLen, alignLen); in appendSegmentMatches() 443 …if ((overlapLen) && ((matchLen * 100) / overlapLen >= thresholdQuality) && (matchLen >= thresholdM… in appendSegmentMatches() 456 …eq1<seq2) _getAlignmentStatistics(dist, seq1, seq2, nseq, matchLen, (matchLen * 100) / overlapLen); in appendSegmentMatches() 457 else _getAlignmentStatistics(dist, seq2, seq1, nseq, matchLen, (matchLen * 100) / overlapLen); in appendSegmentMatches() 550 TSize overlapLen = 0; in appendSegmentMatches() local 552 getAlignmentStatistics(matches, pairSet, from, to, matchLen, overlapLen, alignLen); in appendSegmentMatches() 554 if (((matchLen * 100) / overlapLen >= 80) && (matchLen >= 5)) { in appendSegmentMatches() 556 …eq1<seq2) _getAlignmentStatistics(dist, seq1, seq2, nseq, matchLen, (matchLen * 100) / overlapLen); in appendSegmentMatches() 557 else _getAlignmentStatistics(dist, seq2, seq1, nseq, matchLen, (matchLen * 100) / overlapLen); in appendSegmentMatches()
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/dports/biology/seqan/seqan-library-2.4.0/include/seqan/consensus/ |
H A D | consensus_library.h | 431 TSize overlapLen = 0; in appendSegmentMatches() local 433 …if (from != to) getAlignmentStatistics(matches, pairSet, from, to, matchLen, overlapLen, alignLen); in appendSegmentMatches() 437 …if ((overlapLen) && ((matchLen * 100) / overlapLen >= thresholdQuality) && (matchLen >= thresholdM… in appendSegmentMatches() 450 …eq1<seq2) _getAlignmentStatistics(dist, seq1, seq2, nseq, matchLen, (matchLen * 100) / overlapLen); in appendSegmentMatches() 451 … else _getAlignmentStatistics(dist, seq2, seq1, nseq, matchLen, (matchLen * 100) / overlapLen); in appendSegmentMatches() 544 TSize overlapLen = 0; in appendSegmentMatches() local 546 getAlignmentStatistics(matches, pairSet, from, to, matchLen, overlapLen, alignLen); in appendSegmentMatches() 548 if (((matchLen * 100) / overlapLen >= 80) && (matchLen >= 5)) { in appendSegmentMatches() 550 …eq1<seq2) _getAlignmentStatistics(dist, seq1, seq2, nseq, matchLen, (matchLen * 100) / overlapLen); in appendSegmentMatches() 551 … else _getAlignmentStatistics(dist, seq2, seq1, nseq, matchLen, (matchLen * 100) / overlapLen); in appendSegmentMatches()
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/consensus/ |
H A D | consensus_library.h | 431 TSize overlapLen = 0; in appendSegmentMatches() local 433 …if (from != to) getAlignmentStatistics(matches, pairSet, from, to, matchLen, overlapLen, alignLen); in appendSegmentMatches() 437 …if ((overlapLen) && ((matchLen * 100) / overlapLen >= thresholdQuality) && (matchLen >= thresholdM… in appendSegmentMatches() 450 …eq1<seq2) _getAlignmentStatistics(dist, seq1, seq2, nseq, matchLen, (matchLen * 100) / overlapLen); in appendSegmentMatches() 451 … else _getAlignmentStatistics(dist, seq2, seq1, nseq, matchLen, (matchLen * 100) / overlapLen); in appendSegmentMatches() 544 TSize overlapLen = 0; in appendSegmentMatches() local 546 getAlignmentStatistics(matches, pairSet, from, to, matchLen, overlapLen, alignLen); in appendSegmentMatches() 548 if (((matchLen * 100) / overlapLen >= 80) && (matchLen >= 5)) { in appendSegmentMatches() 550 …eq1<seq2) _getAlignmentStatistics(dist, seq1, seq2, nseq, matchLen, (matchLen * 100) / overlapLen); in appendSegmentMatches() 551 … else _getAlignmentStatistics(dist, seq2, seq1, nseq, matchLen, (matchLen * 100) / overlapLen); in appendSegmentMatches()
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/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/consensus/ |
H A D | consensus_library.h | 434 TSize overlapLen = 0; in appendSegmentMatches() local 436 …if (from != to) getAlignmentStatistics(matches, pairSet, from, to, matchLen, overlapLen, alignLen); in appendSegmentMatches() 440 …if ((overlapLen) && ((matchLen * 100) / overlapLen >= thresholdQuality) && (matchLen >= thresholdM… in appendSegmentMatches() 453 …eq1<seq2) _getAlignmentStatistics(dist, seq1, seq2, nseq, matchLen, (matchLen * 100) / overlapLen); in appendSegmentMatches() 454 … else _getAlignmentStatistics(dist, seq2, seq1, nseq, matchLen, (matchLen * 100) / overlapLen); in appendSegmentMatches() 547 TSize overlapLen = 0; in appendSegmentMatches() local 549 getAlignmentStatistics(matches, pairSet, from, to, matchLen, overlapLen, alignLen); in appendSegmentMatches() 551 if (((matchLen * 100) / overlapLen >= 80) && (matchLen >= 5)) { in appendSegmentMatches() 553 …eq1<seq2) _getAlignmentStatistics(dist, seq1, seq2, nseq, matchLen, (matchLen * 100) / overlapLen); in appendSegmentMatches() 554 … else _getAlignmentStatistics(dist, seq2, seq1, nseq, matchLen, (matchLen * 100) / overlapLen); in appendSegmentMatches()
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/dports/biology/seqan1/seqan-1.3.1/seqan/graph_msa/ |
H A D | graph_align_tcoffee_library.h | 418 TValue overlapLen = 0; in _setDistanceValue() local 420 …Statistics(matches, pairSet, (TPos) from, (TPos) length(matches), matchLen, overlapLen, alignLen); in _setDistanceValue() 446 TCargo overlapLen = 0; in _setDistanceValue() local 448 …atistics(matches, pairSet, (TSize) from, (TSize) length(matches), matchLen, overlapLen, alignLen); in _setDistanceValue() 451 …N_DISTANCE_UNITY - (TCargo) (((double) matchLen / (double) overlapLen) * ((double) overlapLen / (d… in _setDistanceValue()
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/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/graph_msa/ |
H A D | graph_align_tcoffee_library.h | 780 TValue overlapLen = 0; in _setDistanceValue() local 782 …Statistics(matches, pairSet, (TPos) from, (TPos) length(matches), matchLen, overlapLen, alignLen); in _setDistanceValue() 808 TCargo overlapLen = 0; in _setDistanceValue() local 810 …atistics(matches, pairSet, (TSize) from, (TSize) length(matches), matchLen, overlapLen, alignLen); in _setDistanceValue() 813 …N_DISTANCE_UNITY - (TCargo) (((double) matchLen / (double) overlapLen) * ((double) overlapLen / (d… in _setDistanceValue()
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/dports/biology/seqan/seqan-library-2.4.0/include/seqan/graph_msa/ |
H A D | graph_align_tcoffee_library.h | 898 TValue overlapLen = 0; in _setDistanceValue() local 900 …Statistics(matches, pairSet, (TPos) from, (TPos) length(matches), matchLen, overlapLen, alignLen); in _setDistanceValue() 925 TCargo overlapLen = 0; in _setDistanceValue() local 927 …atistics(matches, pairSet, (TSize) from, (TSize) length(matches), matchLen, overlapLen, alignLen); in _setDistanceValue() 930 …N_DISTANCE_UNITY - (TCargo) (((double) matchLen / (double) overlapLen) * ((double) overlapLen / (d… in _setDistanceValue()
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/graph_msa/ |
H A D | graph_align_tcoffee_library.h | 898 TValue overlapLen = 0; in _setDistanceValue() local 900 …Statistics(matches, pairSet, (TPos) from, (TPos) length(matches), matchLen, overlapLen, alignLen); in _setDistanceValue() 925 TCargo overlapLen = 0; in _setDistanceValue() local 927 …atistics(matches, pairSet, (TSize) from, (TSize) length(matches), matchLen, overlapLen, alignLen); in _setDistanceValue() 930 …N_DISTANCE_UNITY - (TCargo) (((double) matchLen / (double) overlapLen) * ((double) overlapLen / (d… in _setDistanceValue()
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/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/spark/sv/utils/ |
H A D | SVIntervalUnitTest.java | 17 Assert.assertTrue(container.overlapLen(containee) == containee.getLength()); in testOverlapLen()
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/dports/biology/cufflinks/cufflinks-2.2.1-89-gdc3b0cb/src/ |
H A D | GBase.h | 318 int overlapLen(GSeg* r) { in overlapLen() function 328 int overlapLen(uint rstart, uint rend) { in overlapLen() function
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H A D | gff_utils.cpp | 113 ovlen=a.exons[0]->overlapLen(b.exons[0]); in tMatch() 152 if (ti.exons[0]->overlapLen(tj.exons[j])>=minovl) in unsplContained() 237 return (ti.exons[0]->overlapLen(tj.exons[0])>=minlen*0.8) ? bigger : NULL; in redundantTranscripts()
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/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/spark/sv/evidence/ |
H A D | SVReadFilter.java | 72 if (depthFilteredInterval.getInterval().overlapLen(interval) == interval.getLength()) { in containedInRegionToIgnore()
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H A D | AlignedAssemblyOrExcuse.java | 160 final int overlapLen = input.readInt(); in readConnection() local 163 return new Connection(target, overlapLen, isRC, isTargetRC); in readConnection()
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/dports/biology/bbmap/bbmap/current/jgi/ |
H A D | BBMergeOverlapper.java | 590 final int overlapLen=(imax-istart); in mateByOverlapJava_unrolled() local 591 …System.err.println("overlapLen="+overlapLen+"; coordinates ("+jstart+"-"+(jstart+overlapLen)+"), (… in mateByOverlapJava_unrolled() 592 System.err.println(new String(abases, jstart, overlapLen)); in mateByOverlapJava_unrolled() 593 System.err.println(new String(bbases, istart, overlapLen)); in mateByOverlapJava_unrolled()
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/dports/biology/canu/canu-2.2/src/stores/ |
H A D | ovStoreFile.H | 210 void writeOverlaps(ovOverlap *overlaps, uint64 overlapLen);
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