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Searched refs:pairarray (Results 1 – 25 of 27) sorted by relevance

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/dports/sysutils/fwup/fwup-1.9.0/src/
H A Duboot_env.c209 struct uboot_name_value **pairarray = in uboot_env_sort() local
213 pairarray[i] = pair; in uboot_env_sort()
215 qsort(pairarray, count, sizeof(struct uboot_name_value *), env_name_compare); in uboot_env_sort()
218 pairarray[i]->next = pairarray[i + 1]; in uboot_env_sort()
219 pairarray[count - 1]->next = NULL; in uboot_env_sort()
220 env->vars = pairarray[0]; in uboot_env_sort()
222 free(pairarray); in uboot_env_sort()
/dports/biology/gmap/gmap-2020-09-12/src/
H A Dstage3.c677 return this->pairarray; in Stage3_pairarray()
5240 struct Pair_T *pairarray; in make_pairarray() local
5291 return pairarray; in make_pairarray()
5367 this_left->pairarray = pairarray; in make_pairarray_merge()
5920 start = &(pairarray[0]); in Stage3_new()
5947 new->pairarray = pairarray; in Stage3_new()
6049 struct Pair_T *pairarray; in Stage3_new_from_pairs() local
6131 memcpy(new->pairarray,old->pairarray,old->npairs*sizeof(struct Pair_T));
12960 pair = &(pairarray[i]);
13085 ptr = pairarray; in Stage3_bad_stretch_p()
[all …]
H A Dsimplepair.h52 struct T *pairarray, int npairs, int querylength,
55 Simplepair_overlap_print_sam (Filestring_T fp, char *abbrev, struct T *pairarray, int npairs,
H A Dpair.h56 Pair_set_genomepos (struct Pair_T *pairarray, int npairs, Univcoord_T chroffset,
218 Pair_print_sam (Filestring_T fp, char *abbrev, struct Pair_T *pairarray, int npairs,
343 struct T *pairarray, int npairs);
347 Pairarray_genomicbound_from_start (struct T *pairarray, int npairs, int overlap);
349 Pairarray_genomicbound_from_end (struct T *pairarray, int npairs, int overlap);
351 Pairarray_genomic_sequence (int *seqlength, struct T *pairarray, int npairs);
H A Dpair.c258 pairarray[i].genomepos = chraliaslength - pairarray[i].genomepos; in Pair_set_genomepos()
2047 pair = &(pairarray[i]);
3949 ptr = pairarray; in Pair_print_bedpe()
4333 ptr = pairarray;
9636 lowi,pairarray[lowi].genomepos,middlei,pairarray[middlei].genomepos,
9688 lowi,pairarray[lowi].genomepos,middlei,pairarray[middlei].genomepos,
9776 start = &(pairarray[0]); in Pairarray_chrpos_bounds()
9793 pair = pairarray[i]; in Pairarray_genomicbound_from_start()
9795 pair = pairarray[i]; in Pairarray_genomicbound_from_start()
9811 pair = pairarray[i]; in Pairarray_genomicbound_from_end()
[all …]
H A Dstage3.h295 Stage3_new (struct Pair_T *pairarray, List_T pairs, int npairs, int goodness,
309 Stage3_short_alignment_p (struct Pair_T *pairarray, int npairs, int querylength);
312 Stage3_bad_stretch_p (struct Pair_T *pairarray, int npairs, int pos5, int pos3);
315 Stage3_good_part (struct Pair_T *pairarray, int npairs, int pos5, int pos3);
H A Dsamprint.c1437 struct Simplepair_T *pairarray; in SAM_print_paired() local
1548 pairarray = Stage3pair_merge(&npairs,&querylength_merged,&queryseq_merged,&quality_merged, in SAM_print_paired()
1563 chrpos_low = Simplepair_genomicpos_low(/*hardclip_low*/0,/*hardclip_high*/0,pairarray,npairs, in SAM_print_paired()
1577 Simplepair_overlap_print_sam(fp,/*abbrev*/ABBREV_UNPAIRED_UNIQ,pairarray,npairs, in SAM_print_paired()
1597 FREE_OUT(pairarray); in SAM_print_paired()
1758 pairarray = Stage3pair_merge(&npairs,&querylength_merged,&queryseq_merged,&quality_merged, in SAM_print_paired()
1773 chrpos_low = Simplepair_genomicpos_low(/*hardclip_low*/0,/*hardclip_high*/0,pairarray,npairs, in SAM_print_paired()
1785 Simplepair_overlap_print_sam(fp,ABBREV_CONCORDANT_MULT,pairarray,npairs, in SAM_print_paired()
1804 FREE_OUT(pairarray); in SAM_print_paired()
H A Dsimplepair.c295 struct T *pairarray, int npairs, int querylength, in Simplepair_genomicpos_low() argument
343 pairarray,npairs,querylength); in Simplepair_genomicpos_low()
358 pairarray,npairs,querylength); in Simplepair_genomicpos_low()
1729 Simplepair_overlap_print_sam (Filestring_T fp, char *abbrev, struct T *pairarray, int npairs, in Simplepair_overlap_print_sam() argument
1803 pairarray,npairs,querylength_given); in Simplepair_overlap_print_sam()
H A Dgmap.c1272 struct Pair_T *pairarray; in update_stage3list() local
1339 pairarray = Stage3_compute_one(&cdna_direction,&sensedir,&pairs,&npairs,&goodness, in update_stage3list()
1367 if (pairarray == NULL) { in update_stage3list()
1370 FREE_OUT(pairarray); in update_stage3list()
1450 struct Pair_T *pairarray; in stage3_from_usersegment() local
1542 if (pairarray == NULL) { in stage3_from_usersegment()
1545 FREE_OUT(pairarray); in stage3_from_usersegment()
1781 struct Pair_T *pairarray; in stage3_from_gregions() local
1912 pairarray = Stage3_compute_ends(&cdna_direction,&sensedir,&pairs,&npairs,&goodness, in stage3_from_gregions()
1938 if (pairarray == NULL) { in stage3_from_gregions()
[all …]
/dports/print/texlive-base/texlive-20150521-source/utils/asymptote/
H A Drunmath.in10 pairarray* => pairArray()
19 typedef array pairarray;
228 pairarray *quadraticroots(explicit pair a, explicit pair b, explicit pair c)
H A Drunarray.cc86 typedef array pairarray; typedef
1651 pairarray * b=vm::pop<pairarray *>(Stack); in gen_runarray59()
1652 pairarray * a=vm::pop<pairarray *>(Stack); in gen_runarray59()
1943 pairarray * a=vm::pop<pairarray *>(Stack); in gen_runarray64()
1969 {Stack->push<pairarray*>(c); return;} in gen_runarray64()
1976 pairarray * z=vm::pop<pairarray *>(Stack); in gen_runarray65()
H A Druntime.in42 pairarray* => pairArray()
119 typedef array pairarray;
915 pairarray *dirSpecifier(guide *g, Int t)
927 pairarray *controlSpecifier(guide *g, Int t)
H A Drunpicture.in21 pairarray* => pairArray()
56 typedef array pairarray;
174 pen fillrule=CURRENTPEN, penarray *p, pairarray *z,
H A Druntime.cc139 typedef array pairarray; typedef
1362 if(!g->cyclic() && (t < 0 || t >= n-1)) {Stack->push<pairarray*>(new array(0)); return;} in gen_runtime107()
1366 {Stack->push<pairarray*>(c); return;} in gen_runtime107()
1379 if(!g->cyclic() && (t < 0 || t >= n-1)) {Stack->push<pairarray*>(new array(0)); return;} in gen_runtime108()
1387 {Stack->push<pairarray*>(c); return;} in gen_runtime108()
1388 } else {Stack->push<pairarray*>(new array(0)); return;} in gen_runtime108()
H A Drunmath.cc70 typedef array pairarray; typedef
413 {Stack->push<pairarray*>(roots); return;} in gen_runmath26()
H A Drunarray.in15 pairarray* => pairArray()
44 typedef array pairarray;
1355 pair dot(pairarray *a, pairarray *b)
1612 pairarray* fft(pairarray *a, Int sign=1)
1641 Intarray2 *triangulate(pairarray *z)
H A Drunpicture.cc90 typedef array pairarray; typedef
286 pairarray * z=vm::pop<pairarray *>(Stack); in gen_runpicture11()
/dports/math/asymptote/asymptote-2.67/
H A Drunmath.in10 pairarray* => pairArray()
27 typedef array pairarray;
342 pairarray *quadraticroots(explicit pair a, explicit pair b, explicit pair c)
H A Druntime.in39 pairarray* => pairArray()
112 typedef array pairarray;
927 pairarray *dirSpecifier(guide *g, Int t)
939 pairarray *controlSpecifier(guide *g, Int t)
H A Drunarray.cc92 typedef array pairarray; typedef
1777 pairarray * b=vm::pop<pairarray *>(Stack); in gen_runarray61()
1778 pairarray * a=vm::pop<pairarray *>(Stack); in gen_runarray61()
2179 pairarray * a=vm::pop<pairarray *>(Stack); in gen_runarray67()
2206 {Stack->push<pairarray*>(c); return;} in gen_runarray67()
2328 pairarray * z=vm::pop<pairarray *>(Stack); in gen_runarray70()
H A Drunpicture.in21 pairarray* => pairArray()
55 typedef array pairarray;
196 pen fillrule=CURRENTPEN, penarray *p, pairarray *z,
H A Druntime.cc137 typedef array pairarray; typedef
1392 if(!g->cyclic() && (t < 0 || t >= n-1)) {Stack->push<pairarray*>(new array(0)); return;} in gen_runtime110()
1396 {Stack->push<pairarray*>(c); return;} in gen_runtime110()
1409 if(!g->cyclic() && (t < 0 || t >= n-1)) {Stack->push<pairarray*>(new array(0)); return;} in gen_runtime111()
1417 {Stack->push<pairarray*>(c); return;} in gen_runtime111()
1418 } else {Stack->push<pairarray*>(new array(0)); return;} in gen_runtime111()
H A Drunmath.cc80 typedef array pairarray; typedef
529 {Stack->push<pairarray*>(roots); return;} in gen_runmath26()
H A Drunarray.in15 pairarray* => pairArray()
49 typedef array pairarray;
1471 pair dot(pairarray *a, pairarray *b)
1830 pairarray* fft(pairarray *a, Int sign=1)
1965 Intarray2 *triangulate(pairarray *z)
H A Drunpicture.cc92 typedef array pairarray; typedef
311 pairarray * z=vm::pop<pairarray *>(Stack); in gen_runpicture11()

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