Searched refs:pairmax_transcriptome (Results 1 – 3 of 3) sorted by relevance
21 static Chrpos_T pairmax_transcriptome; variable27 pairmax_transcriptome = pairmax_transcriptome_in; in Transcript_setup()243 if (start5 < end3 && end3 <= start5 + pairmax_transcriptome) { in Transcript_intersect_p()256 if (end3 < start5 && start5 <= end3 + pairmax_transcriptome) { in Transcript_intersect_p()301 if (start5 < end3 && end3 <= start5 + pairmax_transcriptome) {311 if (end3 < start5 && start5 <= end3 + pairmax_transcriptome) {371 if (start5 < end3 && end3 <= start5 + pairmax_transcriptome) { in Transcript_concordant_p()390 if (end3 < start5 && start5 <= end3 + pairmax_transcriptome) { in Transcript_concordant_p()529 if (start5 < end3 && end3 <= start5 + pairmax_transcriptome) { in Transcript_concordance_print()548 if (end3 < start5 && start5 <= end3 + pairmax_transcriptome) { in Transcript_concordance_print()
316 static int pairmax_transcriptome; variable2521 pairmax_transcriptome = pairmax_dna; in parse_command_line()2541 pairmax_transcriptome = 0; in parse_command_line()2556 pairmax_transcriptome = 0; in parse_command_line()2574 pairmax_transcriptome = 0; in parse_command_line()2592 pairmax_transcriptome = 0; in parse_command_line()2611 pairmax_transcriptome = 0; in parse_command_line()3488 Transcript_setup(pairmax_transcriptome,expected_pairlength); in worker_setup()3519 Concordance_setup(subopt_levels,pairmax_transcriptome,pairmax_linear,pairmax_circular, in worker_setup()
23 static Chrpos_T pairmax_transcriptome; variable79 if (end2 <= start1 + pairmax_transcriptome) {83 if (start1 <= end2 + pairmax_transcriptome) {1853 pairmax_transcriptome = pairmax_transcriptome_in; in Concordance_setup()