Searched refs:pop_cnt (Results 1 – 9 of 9) sorted by relevance
| /dports/biology/stacks/stacks-2.4/src/ |
| H A D | PopSum.h | 233 uint16_t pop_cnt; variable
247 pop_cnt = 0; in NucTally()
261 pop_cnt = 0; in reset()
305 size_t pop_cnt() const { return this->_pop_cnt; } in pop_cnt() function
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| H A D | export_formats.cc | 1869 size_t pop_cnt = this->_mpopi->pops().size(); in write_site() local
1875 if (t->nucs[col].fixed == true || t->nucs[col].allele_cnt != 2 || t->nucs[col].pop_cnt < 2) in write_site()
1879 for (uint p = 0; p < pop_cnt; p++) { in write_site()
1894 for (uint p = 0; p < pop_cnt; p++) { in write_site()
1904 if (p < pop_cnt - 1) this->_tmpfh << "\t"; in write_site()
1919 size_t pop_cnt = this->_mpopi->pops().size(); in write_site() local
1932 for (uint p = 0; p < pop_cnt; p++) { in write_site()
2007 if (p < pop_cnt - 1) in write_site()
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| H A D | populations.h | 88 SumStatsSummary(size_t pop_cnt);
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| H A D | PopSum.cc | 526 mp->nucs[col].pop_cnt += s[j]->nucs[col].num_indv > 0 ? 1 : 0; in tally_metapop()
2050 uint pop_cnt = pop_ids.size(); in haplotype_d_est() local
2090 x += (freq_sum_sq - freq_sq_sum) / (pop_cnt - 1); in haplotype_d_est()
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| H A D | populations.cc | 1311 for (size_t p = 0; p < s->pop_cnt(); ++p) { in filter_snps()
2358 SumStatsSummary::SumStatsSummary(size_t pop_cnt) in SumStatsSummary() argument
2360 this->_pop_cnt = pop_cnt; in SumStatsSummary()
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| /dports/biology/abyss/abyss-2.3.1/RResolver/btllib/include/btllib/ |
| H A D | counting_bloom_filter.hpp | 325 uint64_t pop_cnt = 0; in get_pop_cnt() local
326 #pragma omp parallel for default(none) reduction(+ : pop_cnt) in get_pop_cnt()
329 ++pop_cnt; in get_pop_cnt()
332 return pop_cnt; in get_pop_cnt()
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| H A D | bloom_filter.hpp | 455 uint64_t pop_cnt = 0; in get_pop_cnt() local
456 #pragma omp parallel for default(none) reduction(+ : pop_cnt) in get_pop_cnt()
458 pop_cnt += pop_cnt_byte(array[i]); in get_pop_cnt()
460 return pop_cnt; in get_pop_cnt()
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| /dports/biology/stacks/stacks-2.4/scripts/ |
| H A D | ref_map.pl | 110 my ($pop_cnt, $sample, $num_files, $i, $cmd, $pipe_fh, $path, $cat_file);
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| H A D | denovo_map.pl | 113 my ($pop_cnt, $sample, $num_files, $i, $cmd, $pipe_fh);
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