/dports/biology/jalview/jalview/src/jalview/analysis/ |
H A D | CodonComparator.java | 54 if (ac1.pos1 < ac2.pos1 && ac1.pos3 <= ac2.pos3) in compare() 58 if (ac2.pos1 < ac1.pos1 && ac2.pos3 <= ac1.pos3) in compare() 71 if (ac1.pos3 > ac2.pos3 && ac1.pos1 >= ac2.pos1) in compare() 75 if (ac2.pos3 > ac1.pos3 && ac2.pos1 >= ac1.pos1) in compare() 83 if (ac1.pos1 == ac2.pos1 && ac1.pos3 == ac2.pos3) in compare()
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/dports/biology/gmap/gmap-2020-09-12/src/ |
H A D | genome128_hr.h | 17 int pos5, int pos3, bool plusp, int genestrand); 20 Univcoord_T left, int pos5, int pos3, bool plusp, int genestrand); 25 Univcoord_T left, int pos5, int pos3, bool plusp, int genestrand); 29 Univcoord_T left, int pos5, int pos3, bool plusp, int genestrand); 33 Univcoord_T left, int pos5, int pos3, bool plusp, int genestrand); 37 Univcoord_T left, int pos5, int pos3, bool plusp, int genestrand); 41 Univcoord_T left, int pos5, int pos3, bool plusp, int genestrand, 45 Univcoord_T left, int pos5, int pos3, bool plusp, int genestrand, 50 Univcoord_T left, int pos5, int pos3, 54 Univcoord_T left, int pos5, int pos3,
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H A D | genome_sites.h | 16 Univcoord_T left, int pos5, int pos3); 20 Univcoord_T left, int pos5, int pos3); 24 Univcoord_T left, int pos5, int pos3); 28 Univcoord_T left, int pos5, int pos3); 32 Genome_donor_positions_novel (int *site_positions, Univcoord_T left, int pos5, int pos3); 34 Genome_acceptor_positions_novel (int *site_positions, Univcoord_T left, int pos5, int pos3); 36 Genome_antidonor_positions_novel (int *site_positions, Univcoord_T left, int pos5, int pos3); 38 Genome_antiacceptor_positions_novel (int *site_positions, Univcoord_T left, int pos5, int pos3);
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H A D | indel.c | 68 int pos5, int pos3, int querylength, in Indel_resolve_middle_insertion() argument 81 pos5,pos3)); in Indel_resolve_middle_insertion() 104 nmismatches_allowed,pos5,pos3)); in Indel_resolve_middle_insertion() 132 nmismatches_allowed,pos5,pos3)); in Indel_resolve_middle_insertion() 399 pos5,pos3)); in Indel_resolve_middle_deletion() 422 nmismatches_allowed,pos5,pos3)); in Indel_resolve_middle_deletion() 688 pos5,pos3)); in Indel_resolve_middle_deletion_or_splice() 745 nmismatches_allowed,pos5,pos3)); in Indel_resolve_middle_deletion_or_splice() 762 nmismatches_allowed,pos5,pos3)); in Indel_resolve_middle_deletion_or_splice() 1102 int pos5, pos3, pos5_0, adj; in Indel_solve_end_low() local [all …]
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/dports/emulators/libretro-vice/vice-libretro-5725415/deps/nibtools/ |
H A D | prot.c | 385 pos3 = pos+1; in align_rl_special() 390 pos3 = pos+1; in align_rl_special() 395 pos3 = work_buffer; in align_rl_special() 400 pos3 = pos; in align_rl_special() 446 pos3 = pos+3; in align_rl_special() 463 pos3 = pos+3; in align_rl_special() 489 pos3 = pos+181; in align_rl_special() 504 pos3 = pos+91; in align_rl_special() 521 pos3 = pos+196; in align_rl_special() 539 pos3 = pos+141; in align_rl_special() [all …]
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/dports/lang/racket/racket-8.3/src/regexp/parse/ |
H A D | main.rkt | 62 (values (cons rx rxs) pos3)])])) 77 (values (rx:maybe rx non-greedy?) pos3)] 83 s pos3 171 (check-close-paren s pos3 config))] 177 s pos3 203 (check-close-paren s pos3 config))] 207 (check-close-paren s pos3 config))] 234 s pos3 236 (missing-closing-error s pos3 config)] 252 (add1 pos3))])) [all …]
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/dports/lang/racket-minimal/racket-8.3/src/regexp/parse/ |
H A D | main.rkt | 62 (values (cons rx rxs) pos3)])])) 77 (values (rx:maybe rx non-greedy?) pos3)] 83 s pos3 171 (check-close-paren s pos3 config))] 177 s pos3 203 (check-close-paren s pos3 config))] 207 (check-close-paren s pos3 config))] 234 s pos3 236 (missing-closing-error s pos3 config)] 252 (add1 pos3))])) [all …]
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/dports/graphics/py-pyqtgraph/pyqtgraph-0.12.3/examples/ |
H A D | GLScatterPlotItem.py | 73 pos3 = np.zeros((100,100,3)) variable 74 pos3[:,:,:2] = np.mgrid[:100, :100].transpose(1,2,0) * [-0.1,0.1] 75 pos3 = pos3.reshape(10000,3) variable 76 d3 = (pos3**2).sum(axis=1)**0.5 78 sp3 = gl.GLScatterPlotItem(pos=pos3, color=(1,1,1,.3), size=0.1, pxMode=False) 96 global sp3, d3, pos3 98 pos3[:,2] = z 104 sp3.setData(pos=pos3, color=color)
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/dports/math/vtk8/VTK-8.2.0/IO/Infovis/ |
H A D | vtkBiomTableReader.cxx | 173 size_t pos3 = this->FileContents.find(',', pos2+1); in ParseShape() local 174 if (pos3 == std::string::npos ) in ParseShape() 181 size_t pos4 = this->FileContents.find(']', pos3+1); in ParseShape() 194 atoi(this->FileContents.substr(pos3+1,pos4-pos3-1).c_str()); in ParseShape() 217 size_t pos3 = this->FileContents.find('\"', pos2+1); in ParseDataType() local 218 if (pos3 == std::string::npos ) in ParseDataType() 225 size_t pos4 = this->FileContents.find('\"', pos3+1); in ParseDataType() 233 std::string data_type = this->FileContents.substr(pos3+1,pos4-pos3-1); in ParseDataType() 315 size_t pos3 = this->FileContents.find('\"', pos2+1); in ParseSparseness() local 376 if (pos3 == std::string::npos) in ParseSparseData() [all …]
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/dports/math/vtk9/VTK-9.1.0/IO/Infovis/ |
H A D | vtkBiomTableReader.cxx | 173 size_t pos3 = this->FileContents.find(',', pos2 + 1); in ParseShape() local 174 if (pos3 == std::string::npos) in ParseShape() 181 size_t pos4 = this->FileContents.find(']', pos3 + 1); in ParseShape() 192 this->NumberOfColumns = atoi(this->FileContents.substr(pos3 + 1, pos4 - pos3 - 1).c_str()); in ParseShape() 215 size_t pos3 = this->FileContents.find('\"', pos2 + 1); in ParseDataType() local 216 if (pos3 == std::string::npos) in ParseDataType() 223 size_t pos4 = this->FileContents.find('\"', pos3 + 1); in ParseDataType() 231 std::string data_type = this->FileContents.substr(pos3 + 1, pos4 - pos3 - 1); in ParseDataType() 313 size_t pos3 = this->FileContents.find('\"', pos2 + 1); in ParseSparseness() local 374 if (pos3 == std::string::npos) in ParseSparseData() [all …]
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/dports/biology/jalview/jalview/src/jalview/datamodel/ |
H A D | AlignedCodon.java | 42 public final int pos3; field in AlignedCodon 59 pos3 = k; in AlignedCodon() 78 return base == 1 ? pos1 : (base == 2 ? pos2 : pos3); in getBaseColumn() 103 return (pos1 == ac.pos1 && pos2 == ac.pos2 && pos3 == ac.pos3); in equals() 111 .append(pos3).append("]"); in toString()
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/dports/math/vtk6/VTK-6.2.0/IO/Infovis/ |
H A D | vtkBiomTableReader.cxx | 206 size_t pos3 = this->FileContents.find(",", pos2+1); in ParseShape() local 207 if (pos3 == std::string::npos ) in ParseShape() 214 size_t pos4 = this->FileContents.find("]", pos3+1); in ParseShape() 227 atoi(this->FileContents.substr(pos3+1,pos4-pos3-1).c_str()); in ParseShape() 250 size_t pos3 = this->FileContents.find("\"", pos2+1); in ParseDataType() local 251 if (pos3 == std::string::npos ) in ParseDataType() 258 size_t pos4 = this->FileContents.find("\"", pos3+1); in ParseDataType() 266 std::string data_type = this->FileContents.substr(pos3+1,pos4-pos3-1); in ParseDataType() 348 size_t pos3 = this->FileContents.find("\"", pos2+1); in ParseSparseness() local 409 if (pos3 == std::string::npos) in ParseSparseData() [all …]
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/dports/graphics/libosmesa-gallium/mesa-21.3.6/src/gallium/auxiliary/draw/ |
H A D | draw_pipe_wide_line.c | 64 float *pos3 = v3->data[pos]; in wideline_line() local 86 pos3[1] = pos3[1] + half_width - bias; in wideline_line() 93 pos3[0] -= 0.5f; in wideline_line() 100 pos3[0] += 0.5f; in wideline_line() 109 pos3[0] = pos3[0] + half_width + bias; in wideline_line() 116 pos3[1] -= 0.5f; in wideline_line() 123 pos3[1] += 0.5f; in wideline_line()
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/dports/graphics/mesa-libs/mesa-21.3.6/src/gallium/auxiliary/draw/ |
H A D | draw_pipe_wide_line.c | 64 float *pos3 = v3->data[pos]; in wideline_line() local 86 pos3[1] = pos3[1] + half_width - bias; in wideline_line() 93 pos3[0] -= 0.5f; in wideline_line() 100 pos3[0] += 0.5f; in wideline_line() 109 pos3[0] = pos3[0] + half_width + bias; in wideline_line() 116 pos3[1] -= 0.5f; in wideline_line() 123 pos3[1] += 0.5f; in wideline_line()
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/dports/graphics/mesa-gallium-va/mesa-21.3.6/src/gallium/auxiliary/draw/ |
H A D | draw_pipe_wide_line.c | 64 float *pos3 = v3->data[pos]; in wideline_line() local 86 pos3[1] = pos3[1] + half_width - bias; in wideline_line() 93 pos3[0] -= 0.5f; in wideline_line() 100 pos3[0] += 0.5f; in wideline_line() 109 pos3[0] = pos3[0] + half_width + bias; in wideline_line() 116 pos3[1] -= 0.5f; in wideline_line() 123 pos3[1] += 0.5f; in wideline_line()
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/dports/graphics/mesa-dri-gallium/mesa-21.3.6/src/gallium/auxiliary/draw/ |
H A D | draw_pipe_wide_line.c | 64 float *pos3 = v3->data[pos]; in wideline_line() local 86 pos3[1] = pos3[1] + half_width - bias; in wideline_line() 93 pos3[0] -= 0.5f; in wideline_line() 100 pos3[0] += 0.5f; in wideline_line() 109 pos3[0] = pos3[0] + half_width + bias; in wideline_line() 116 pos3[1] -= 0.5f; in wideline_line() 123 pos3[1] += 0.5f; in wideline_line()
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/dports/graphics/mesa-gallium-vdpau/mesa-21.3.6/src/gallium/auxiliary/draw/ |
H A D | draw_pipe_wide_line.c | 64 float *pos3 = v3->data[pos]; in wideline_line() local 86 pos3[1] = pos3[1] + half_width - bias; in wideline_line() 93 pos3[0] -= 0.5f; in wideline_line() 100 pos3[0] += 0.5f; in wideline_line() 109 pos3[0] = pos3[0] + half_width + bias; in wideline_line() 116 pos3[1] -= 0.5f; in wideline_line() 123 pos3[1] += 0.5f; in wideline_line()
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/dports/graphics/mesa-gallium-xa/mesa-21.3.6/src/gallium/auxiliary/draw/ |
H A D | draw_pipe_wide_line.c | 64 float *pos3 = v3->data[pos]; in wideline_line() local 86 pos3[1] = pos3[1] + half_width - bias; in wideline_line() 93 pos3[0] -= 0.5f; in wideline_line() 100 pos3[0] += 0.5f; in wideline_line() 109 pos3[0] = pos3[0] + half_width + bias; in wideline_line() 116 pos3[1] -= 0.5f; in wideline_line() 123 pos3[1] += 0.5f; in wideline_line()
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/dports/graphics/mesa-devel/mesa-22.0-branchpoint-2059-ge8a63cf61ec/src/gallium/auxiliary/draw/ |
H A D | draw_pipe_wide_line.c | 64 float *pos3 = v3->data[pos]; in wideline_line() local 86 pos3[1] = pos3[1] + half_width - bias; in wideline_line() 93 pos3[0] -= 0.5f; in wideline_line() 100 pos3[0] += 0.5f; in wideline_line() 109 pos3[0] = pos3[0] + half_width + bias; in wideline_line() 116 pos3[1] -= 0.5f; in wideline_line() 123 pos3[1] += 0.5f; in wideline_line()
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/dports/graphics/libosmesa/mesa-21.3.6/src/gallium/auxiliary/draw/ |
H A D | draw_pipe_wide_line.c | 64 float *pos3 = v3->data[pos]; in wideline_line() local 86 pos3[1] = pos3[1] + half_width - bias; in wideline_line() 93 pos3[0] -= 0.5f; in wideline_line() 100 pos3[0] += 0.5f; in wideline_line() 109 pos3[0] = pos3[0] + half_width + bias; in wideline_line() 116 pos3[1] -= 0.5f; in wideline_line() 123 pos3[1] += 0.5f; in wideline_line()
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/dports/graphics/mesa-dri/mesa-21.3.6/src/gallium/auxiliary/draw/ |
H A D | draw_pipe_wide_line.c | 64 float *pos3 = v3->data[pos]; in wideline_line() local 86 pos3[1] = pos3[1] + half_width - bias; in wideline_line() 93 pos3[0] -= 0.5f; in wideline_line() 100 pos3[0] += 0.5f; in wideline_line() 109 pos3[0] = pos3[0] + half_width + bias; in wideline_line() 116 pos3[1] -= 0.5f; in wideline_line() 123 pos3[1] += 0.5f; in wideline_line()
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/dports/lang/clover/mesa-21.3.6/src/gallium/auxiliary/draw/ |
H A D | draw_pipe_wide_line.c | 64 float *pos3 = v3->data[pos]; in wideline_line() local 86 pos3[1] = pos3[1] + half_width - bias; in wideline_line() 93 pos3[0] -= 0.5f; in wideline_line() 100 pos3[0] += 0.5f; in wideline_line() 109 pos3[0] = pos3[0] + half_width + bias; in wideline_line() 116 pos3[1] -= 0.5f; in wideline_line() 123 pos3[1] += 0.5f; in wideline_line()
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/dports/math/vtk8/VTK-8.2.0/Interaction/Widgets/Testing/Cxx/ |
H A D | vtkConstrainedPointHandleRepresentationTest1.cxx | 130 double pos3[3]; in vtkConstrainedPointHandleRepresentationTest1() local 131 node1->GetPosition(pos3); in vtkConstrainedPointHandleRepresentationTest1() 132 if (pos3[0] != pos[0] || in vtkConstrainedPointHandleRepresentationTest1() 133 pos3[1] != pos[1]) in vtkConstrainedPointHandleRepresentationTest1() 135 …", " << pos[1] << ", " << pos[2] <<", instead got " << pos3[0] << ", " << pos3[1] << ", " << pos3[… in vtkConstrainedPointHandleRepresentationTest1() 140 std::cout << "Set Position to " << pos3[0] << ", " << pos3[1] << ", " << pos3[2] << std::endl; in vtkConstrainedPointHandleRepresentationTest1()
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/dports/math/vtk9/VTK-9.1.0/Interaction/Widgets/Testing/Cxx/ |
H A D | vtkConstrainedPointHandleRepresentationTest1.cxx | 119 double pos3[3]; in vtkConstrainedPointHandleRepresentationTest1() local 120 node1->GetPosition(pos3); in vtkConstrainedPointHandleRepresentationTest1() 121 if (pos3[0] != pos[0] || pos3[1] != pos[1]) in vtkConstrainedPointHandleRepresentationTest1() 124 << pos[2] << ", instead got " << pos3[0] << ", " << pos3[1] << ", " << pos3[2] in vtkConstrainedPointHandleRepresentationTest1() 130 std::cout << "Set Position to " << pos3[0] << ", " << pos3[1] << ", " << pos3[2] << std::endl; in vtkConstrainedPointHandleRepresentationTest1()
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/dports/math/vtk6/VTK-6.2.0/Interaction/Widgets/Testing/Cxx/ |
H A D | vtkConstrainedPointHandleRepresentationTest1.cxx | 130 double pos3[3]; in vtkConstrainedPointHandleRepresentationTest1() local 131 node1->GetPosition(pos3); in vtkConstrainedPointHandleRepresentationTest1() 132 if (pos3[0] != pos[0] || in vtkConstrainedPointHandleRepresentationTest1() 133 pos3[1] != pos[1]) in vtkConstrainedPointHandleRepresentationTest1() 135 …", " << pos[1] << ", " << pos[2] <<", instead got " << pos3[0] << ", " << pos3[1] << ", " << pos3[… in vtkConstrainedPointHandleRepresentationTest1() 140 std::cout << "Set Position to " << pos3[0] << ", " << pos3[1] << ", " << pos3[2] << std::endl; in vtkConstrainedPointHandleRepresentationTest1()
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