Searched refs:positions_access (Results 1 – 6 of 6) sorted by relevance
/dports/biology/gmap/gmap-2020-09-12/src/ |
H A D | indexdb.c | 313 if (this->positions_access == FILEIO) { in Indexdb_positions_fileio_p() 1421 if (positions_access == USE_ALLOCATE) { in load_positions_high() 1554 if (positions_access == USE_ALLOCATE) { in load_positions() 1571 new->positions_access = MMAPPED; in load_positions() 1614 new->positions_access = MMAPPED; in load_positions() 1639 new->positions_access = MMAPPED; in load_positions() 1659 if (new->positions_access == FILEIO) { in load_positions() 2234 if (this->positions_access == FILEIO) { in Indexdb_read() 2274 …} else if (this->positions_access == ALLOCATED_PRIVATE || this->positions_access == ALLOCATED_SHAR… in Indexdb_read() 2426 this->positions_access == ALLOCATED_PRIVATE || this->positions_access == ALLOCATED_SHARED) { [all …]
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H A D | indexdb.h | 127 Access_mode_T offsetsstrm_access, Access_mode_T positions_access, bool sharedp, 137 Access_mode_T offsetsstrm_access, Access_mode_T positions_access, bool sharedp,
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H A D | indexdbdef.h | 70 Access_T positions_access; member
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H A D | gsnap.c | 298 static Access_mode_T positions_access = USE_ALLOCATE; variable 307 static Access_mode_T positions_access = USE_ALLOCATE; variable 2381 positions_access = USE_ALLOCATE; in parse_command_line() 2390 positions_access = USE_ALLOCATE; in parse_command_line() 2398 positions_access = USE_ALLOCATE; in parse_command_line() 2422 positions_access = USE_MMAP_ONLY; /* was batch_positions_p = false */ in parse_command_line() 3156 offsetsstrm_access,positions_access,sharedp, in worker_setup() 3175 offsetsstrm_access,positions_access,sharedp, in worker_setup() 3904 positions_access = USE_MMAP_ONLY; in main() 3911 positions_access = USE_ALLOCATE; in main() [all …]
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H A D | snpindex.c | 1219 Access_T offsetsmeta_access, offsetsstrm_access, positions_access; in main() local 1461 …ref_positions8_high = (unsigned char *) Access_allocate_private(&positions_access,&ref_positions_h… in main() 1463 …ref_positions8_low = (UINT4 *) Access_allocate_private(&positions_access,&ref_positions_len,&secon… in main() 1493 … ref_positions4 = (UINT4 *) Access_allocate_private(&positions_access,&ref_positions_len,&seconds, in main()
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H A D | gmap.c | 331 static Access_mode_T positions_access = USE_MMAP_PRELOAD; variable 338 static Access_mode_T positions_access = USE_ALLOCATE; variable 6026 positions_access = USE_ALLOCATE; in parse_command_line() 6034 positions_access = USE_ALLOCATE; in parse_command_line() 6043 positions_access = USE_ALLOCATE; in parse_command_line() 6051 positions_access = USE_MMAP_PRELOAD; /* was batch_positions_p = true */ in parse_command_line() 6067 positions_access = USE_MMAP_ONLY; /* was batch_positions_p = false */ in parse_command_line() 6641 positions_access = USE_MMAP_ONLY; in main() 6645 positions_access = USE_ALLOCATE; in main() 6845 offsetsstrm_access,positions_access, in main() [all …]
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