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Searched refs:positions_access (Results 1 – 6 of 6) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A Dindexdb.c313 if (this->positions_access == FILEIO) { in Indexdb_positions_fileio_p()
1421 if (positions_access == USE_ALLOCATE) { in load_positions_high()
1554 if (positions_access == USE_ALLOCATE) { in load_positions()
1571 new->positions_access = MMAPPED; in load_positions()
1614 new->positions_access = MMAPPED; in load_positions()
1639 new->positions_access = MMAPPED; in load_positions()
1659 if (new->positions_access == FILEIO) { in load_positions()
2234 if (this->positions_access == FILEIO) { in Indexdb_read()
2274 …} else if (this->positions_access == ALLOCATED_PRIVATE || this->positions_access == ALLOCATED_SHAR… in Indexdb_read()
2426 this->positions_access == ALLOCATED_PRIVATE || this->positions_access == ALLOCATED_SHARED) {
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H A Dindexdb.h127 Access_mode_T offsetsstrm_access, Access_mode_T positions_access, bool sharedp,
137 Access_mode_T offsetsstrm_access, Access_mode_T positions_access, bool sharedp,
H A Dindexdbdef.h70 Access_T positions_access; member
H A Dgsnap.c298 static Access_mode_T positions_access = USE_ALLOCATE; variable
307 static Access_mode_T positions_access = USE_ALLOCATE; variable
2381 positions_access = USE_ALLOCATE; in parse_command_line()
2390 positions_access = USE_ALLOCATE; in parse_command_line()
2398 positions_access = USE_ALLOCATE; in parse_command_line()
2422 positions_access = USE_MMAP_ONLY; /* was batch_positions_p = false */ in parse_command_line()
3156 offsetsstrm_access,positions_access,sharedp, in worker_setup()
3175 offsetsstrm_access,positions_access,sharedp, in worker_setup()
3904 positions_access = USE_MMAP_ONLY; in main()
3911 positions_access = USE_ALLOCATE; in main()
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H A Dsnpindex.c1219 Access_T offsetsmeta_access, offsetsstrm_access, positions_access; in main() local
1461 …ref_positions8_high = (unsigned char *) Access_allocate_private(&positions_access,&ref_positions_h… in main()
1463 …ref_positions8_low = (UINT4 *) Access_allocate_private(&positions_access,&ref_positions_len,&secon… in main()
1493 … ref_positions4 = (UINT4 *) Access_allocate_private(&positions_access,&ref_positions_len,&seconds, in main()
H A Dgmap.c331 static Access_mode_T positions_access = USE_MMAP_PRELOAD; variable
338 static Access_mode_T positions_access = USE_ALLOCATE; variable
6026 positions_access = USE_ALLOCATE; in parse_command_line()
6034 positions_access = USE_ALLOCATE; in parse_command_line()
6043 positions_access = USE_ALLOCATE; in parse_command_line()
6051 positions_access = USE_MMAP_PRELOAD; /* was batch_positions_p = true */ in parse_command_line()
6067 positions_access = USE_MMAP_ONLY; /* was batch_positions_p = false */ in parse_command_line()
6641 positions_access = USE_MMAP_ONLY; in main()
6645 positions_access = USE_ALLOCATE; in main()
6845 offsetsstrm_access,positions_access, in main()
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