| /dports/biology/stacks/stacks-2.4/src/ |
| H A D | process_shortreads.h | 54 int process_reads(string,
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| H A D | process_radtags.h | 55 int process_reads(string,
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| H A D | kmer_filter.h | 69 int process_reads(string, string, SeqKmerHash &, map<string, long> &);
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| H A D | clone_filter.h | 87 int process_reads(string, map<string, long> &, OligoHash &);
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| H A D | process_shortreads.cc | 172 result = process_reads(files[i].first, in main()
177 result = process_reads(files[i].first, in main()
440 process_reads(string prefix, in process_reads() function
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| H A D | process_radtags.cc | 189 result = process_reads(files[i].first, in main()
194 result = process_reads(files[i].first, in main()
474 process_reads(string prefix, in process_reads() function
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| H A D | clone_filter.cc | 147 result = process_reads(files[i].first, counters, oligo_map); in main()
852 process_reads(string prefix_1, map<string, long> &counters, OligoHash &oligo_map) in process_reads() function
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| H A D | kmer_filter.cc | 154 process_reads(files[i].first, in main()
442 int process_reads(string in_path, in process_reads() function
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| /dports/biology/py-cutadapt/cutadapt-3.3/src/cutadapt/ |
| H A D | pipeline.py | 289 def process_reads(self, progress: Progress = None) -> Tuple[int, int, Optional[int]]: member in Pipeline
322 def process_reads(self, progress: Progress = None) -> Tuple[int, int, Optional[int]]: member in SingleEndPipeline
423 def process_reads(self, progress: Progress = None) -> Tuple[int, int, Optional[int]]: member in PairedEndPipeline
631 (n, bp1, bp2) = self._pipeline.process_reads()
866 (n, total1_bp, total2_bp) = self._pipeline.process_reads(progress=self._progress)
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| /dports/biology/stringtie/stringtie-2.1.1/SuperReads_RNA/global-1/SuperReadsR/src2/ |
| H A D | findMatchesBetweenKUnitigsAndReads.cc | 301 ProcessReads process_reads(args.readFiles_arg.begin(), args.readFiles_arg.end(), in main() local
303 process_reads.exec_join(args.threads_arg); in main()
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| /dports/net/openmpi3/openmpi-3.1.6/orte/mca/dfs/test/ |
| H A D | dfs_test.c | 900 static void process_reads(int fd, short args, void *cbdata) in process_reads() function
993 ORTE_THREADSHIFT(dfs, orte_event_base, process_reads, ORTE_SYS_PRI); in dfs_read()
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| /dports/net/openmpi3/openmpi-3.1.6/orte/mca/dfs/app/ |
| H A D | dfs_app.c | 1050 static void process_reads(int fd, short args, void *cbdata) in process_reads() function
1159 ORTE_THREADSHIFT(dfs, orte_event_base, process_reads, ORTE_SYS_PRI); in dfs_read()
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| /dports/net/openmpi3/openmpi-3.1.6/orte/mca/dfs/orted/ |
| H A D | dfs_orted.c | 828 static void process_reads(int fd, short args, void *cbdata) in process_reads() function
937 ORTE_THREADSHIFT(dfs, orte_event_base, process_reads, ORTE_SYS_PRI); in dfs_read()
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