/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/api/ |
H A D | pssmenginefreqratios_unit_test.cpp | 66 CPssmEngine pssm_engine(null_ptr); in createNullPssmInputFreqRatios() local 90 CPssmEngine pssm_engine(pssm_input.get()); in BOOST_AUTO_TEST_CASE() local 92 (CScorematPssmConverter::GetScores(*pssm_engine.Run())); in BOOST_AUTO_TEST_CASE() 134 CPssmEngine pssm_engine(&pssm_input); in BOOST_AUTO_TEST_CASE() local 135 CRef<objects::CPssmWithParameters> pssm_w_param = pssm_engine.Run(); in BOOST_AUTO_TEST_CASE()
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H A D | pssmcreate_cdd_unit_test.cpp | 408 CPssmEngine pssm_engine(&pssm_input); in BOOST_AUTO_TEST_CASE() local 409 BOOST_REQUIRE_THROW(pssm_engine.Run(), CBlastException); in BOOST_AUTO_TEST_CASE() 417 CPssmEngine pssm_engine(&pssm_input); in BOOST_AUTO_TEST_CASE() local 418 BOOST_REQUIRE_THROW(pssm_engine.Run(), CBlastException); in BOOST_AUTO_TEST_CASE() 425 CPssmEngine pssm_engine(&pssm_input); in BOOST_AUTO_TEST_CASE() local 426 BOOST_REQUIRE_THROW(pssm_engine.Run(), CBlastException); in BOOST_AUTO_TEST_CASE() 433 CPssmEngine pssm_engine(&pssm_input); in BOOST_AUTO_TEST_CASE() local 930 CPssmEngine pssm_engine(pssm_input); in BOOST_AUTO_TEST_CASE() local 931 CRef<CPssmWithParameters> pssm = pssm_engine.Run(); in BOOST_AUTO_TEST_CASE() 1011 CPssmEngine pssm_engine(pssm_input); in BOOST_AUTO_TEST_CASE() local [all …]
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H A D | pssmcreate_unit_test.cpp | 610 CRef<CPssmEngine> pssm_engine(new CPssmEngine(pssm_strategy)); in BOOST_FIXTURE_TEST_SUITE() local 611 CRef<CPssmWithParameters> pssm = pssm_engine->Run(); in BOOST_FIXTURE_TEST_SUITE() 673 CPssmEngine pssm_engine(pssm_input.get()); in BOOST_AUTO_TEST_CASE() local 807 CPssmEngine pssm_engine(pssm_input.get()); in BOOST_AUTO_TEST_CASE() local 808 CRef<CPssmWithParameters> pssm_asn = pssm_engine.Run(); in BOOST_AUTO_TEST_CASE() 1198 CPssmEngine pssm_engine(bad_pssm_data.get()); in BOOST_AUTO_TEST_CASE() local 1199 BOOST_REQUIRE_THROW(pssm_engine.Run(), CBlastException); in BOOST_AUTO_TEST_CASE() 1204 CPssmEngine pssm_engine(bad_pssm_data.get()); in BOOST_AUTO_TEST_CASE() local 1205 BOOST_REQUIRE_THROW(pssm_engine.Run(), CBlastException); in BOOST_AUTO_TEST_CASE() 1215 BOOST_REQUIRE_THROW(CPssmEngine pssm_engine(null_ptr), CPssmEngineException); in BOOST_AUTO_TEST_CASE() [all …]
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/api/ |
H A D | pssmenginefreqratios_unit_test.cpp | 66 CPssmEngine pssm_engine(null_ptr); in createNullPssmInputFreqRatios() local 90 CPssmEngine pssm_engine(pssm_input.get()); in BOOST_AUTO_TEST_CASE() local 92 (CScorematPssmConverter::GetScores(*pssm_engine.Run())); in BOOST_AUTO_TEST_CASE() 134 CPssmEngine pssm_engine(&pssm_input); in BOOST_AUTO_TEST_CASE() local 135 CRef<objects::CPssmWithParameters> pssm_w_param = pssm_engine.Run(); in BOOST_AUTO_TEST_CASE()
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H A D | pssmcreate_cdd_unit_test.cpp | 408 CPssmEngine pssm_engine(&pssm_input); in BOOST_AUTO_TEST_CASE() local 409 BOOST_REQUIRE_THROW(pssm_engine.Run(), CBlastException); in BOOST_AUTO_TEST_CASE() 417 CPssmEngine pssm_engine(&pssm_input); in BOOST_AUTO_TEST_CASE() local 418 BOOST_REQUIRE_THROW(pssm_engine.Run(), CBlastException); in BOOST_AUTO_TEST_CASE() 425 CPssmEngine pssm_engine(&pssm_input); in BOOST_AUTO_TEST_CASE() local 426 BOOST_REQUIRE_THROW(pssm_engine.Run(), CBlastException); in BOOST_AUTO_TEST_CASE() 433 CPssmEngine pssm_engine(&pssm_input); in BOOST_AUTO_TEST_CASE() local 930 CPssmEngine pssm_engine(pssm_input); in BOOST_AUTO_TEST_CASE() local 931 CRef<CPssmWithParameters> pssm = pssm_engine.Run(); in BOOST_AUTO_TEST_CASE() 1011 CPssmEngine pssm_engine(pssm_input); in BOOST_AUTO_TEST_CASE() local [all …]
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H A D | pssmcreate_unit_test.cpp | 610 CRef<CPssmEngine> pssm_engine(new CPssmEngine(pssm_strategy)); in BOOST_FIXTURE_TEST_SUITE() local 611 CRef<CPssmWithParameters> pssm = pssm_engine->Run(); in BOOST_FIXTURE_TEST_SUITE() 673 CPssmEngine pssm_engine(pssm_input.get()); in BOOST_AUTO_TEST_CASE() local 807 CPssmEngine pssm_engine(pssm_input.get()); in BOOST_AUTO_TEST_CASE() local 808 CRef<CPssmWithParameters> pssm_asn = pssm_engine.Run(); in BOOST_AUTO_TEST_CASE() 1198 CPssmEngine pssm_engine(bad_pssm_data.get()); in BOOST_AUTO_TEST_CASE() local 1199 BOOST_REQUIRE_THROW(pssm_engine.Run(), CBlastException); in BOOST_AUTO_TEST_CASE() 1204 CPssmEngine pssm_engine(bad_pssm_data.get()); in BOOST_AUTO_TEST_CASE() local 1205 BOOST_REQUIRE_THROW(pssm_engine.Run(), CBlastException); in BOOST_AUTO_TEST_CASE() 1215 BOOST_REQUIRE_THROW(CPssmEngine pssm_engine(null_ptr), CPssmEngineException); in BOOST_AUTO_TEST_CASE() [all …]
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/api/ |
H A D | deltablast.cpp | 128 CRef<CPssmEngine> pssm_engine; in Run() local 129 pssm_engine.Reset(new CPssmEngine(pssm_input.GetNonNullPointer())); in Run() 132 m_Pssm.push_back(pssm_engine->Run()); in Run()
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H A D | Makefile.xblast.lib.unix | 13 psiblast_aux_priv.o pssm_engine.o: %.o: $(srcdir)/%.cpp
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H A D | psiblast_aux_priv.cpp | 484 CPssmEngine pssm_engine(&pssm_engine_input); in PsiBlastComputePssmScores() local 485 CRef<CPssmWithParameters> pssm_with_scores(pssm_engine.Run()); in PsiBlastComputePssmScores()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/api/ |
H A D | deltablast.cpp | 128 CRef<CPssmEngine> pssm_engine; in Run() local 129 pssm_engine.Reset(new CPssmEngine(pssm_input.GetNonNullPointer())); in Run() 132 m_Pssm.push_back(pssm_engine->Run()); in Run()
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H A D | Makefile.xblast.lib.unix | 12 psiblast_aux_priv.o pssm_engine.o: %.o: $(srcdir)/%.cpp
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H A D | psiblast_aux_priv.cpp | 484 CPssmEngine pssm_engine(&pssm_engine_input); in PsiBlastComputePssmScores() local 485 CRef<CPssmWithParameters> pssm_with_scores(pssm_engine.Run()); in PsiBlastComputePssmScores()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/app/blastdb/ |
H A D | makeprofiledb.cpp | 888 CPssmEngine pssm_engine(&pssm_freq_ratio); in x_RPSUpdateStatistics() local 889 CRef<CPssmWithParameters> out_par(pssm_engine.Run()); in x_RPSUpdateStatistics()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/blastdb/ |
H A D | makeprofiledb.cpp | 888 CPssmEngine pssm_engine(&pssm_freq_ratio); in x_RPSUpdateStatistics() local 889 CRef<CPssmWithParameters> out_par(pssm_engine.Run()); in x_RPSUpdateStatistics()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/blastinput/ |
H A D | blast_args.cpp | 1233 CPssmEngine pssm_engine(&pssm_input); in x_CreatePssmFromMsa() local 1234 return pssm_engine.Run(); in x_CreatePssmFromMsa()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/blastinput/ |
H A D | blast_args.cpp | 1233 CPssmEngine pssm_engine(&pssm_input); in x_CreatePssmFromMsa() local 1234 return pssm_engine.Run(); in x_CreatePssmFromMsa()
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