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Searched refs:pssm_engine (Results 1 – 16 of 16) sorted by relevance

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/api/
H A Dpssmenginefreqratios_unit_test.cpp66 CPssmEngine pssm_engine(null_ptr); in createNullPssmInputFreqRatios() local
90 CPssmEngine pssm_engine(pssm_input.get()); in BOOST_AUTO_TEST_CASE() local
92 (CScorematPssmConverter::GetScores(*pssm_engine.Run())); in BOOST_AUTO_TEST_CASE()
134 CPssmEngine pssm_engine(&pssm_input); in BOOST_AUTO_TEST_CASE() local
135 CRef<objects::CPssmWithParameters> pssm_w_param = pssm_engine.Run(); in BOOST_AUTO_TEST_CASE()
H A Dpssmcreate_cdd_unit_test.cpp408 CPssmEngine pssm_engine(&pssm_input); in BOOST_AUTO_TEST_CASE() local
409 BOOST_REQUIRE_THROW(pssm_engine.Run(), CBlastException); in BOOST_AUTO_TEST_CASE()
417 CPssmEngine pssm_engine(&pssm_input); in BOOST_AUTO_TEST_CASE() local
418 BOOST_REQUIRE_THROW(pssm_engine.Run(), CBlastException); in BOOST_AUTO_TEST_CASE()
425 CPssmEngine pssm_engine(&pssm_input); in BOOST_AUTO_TEST_CASE() local
426 BOOST_REQUIRE_THROW(pssm_engine.Run(), CBlastException); in BOOST_AUTO_TEST_CASE()
433 CPssmEngine pssm_engine(&pssm_input); in BOOST_AUTO_TEST_CASE() local
930 CPssmEngine pssm_engine(pssm_input); in BOOST_AUTO_TEST_CASE() local
931 CRef<CPssmWithParameters> pssm = pssm_engine.Run(); in BOOST_AUTO_TEST_CASE()
1011 CPssmEngine pssm_engine(pssm_input); in BOOST_AUTO_TEST_CASE() local
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H A Dpssmcreate_unit_test.cpp610 CRef<CPssmEngine> pssm_engine(new CPssmEngine(pssm_strategy)); in BOOST_FIXTURE_TEST_SUITE() local
611 CRef<CPssmWithParameters> pssm = pssm_engine->Run(); in BOOST_FIXTURE_TEST_SUITE()
673 CPssmEngine pssm_engine(pssm_input.get()); in BOOST_AUTO_TEST_CASE() local
807 CPssmEngine pssm_engine(pssm_input.get()); in BOOST_AUTO_TEST_CASE() local
808 CRef<CPssmWithParameters> pssm_asn = pssm_engine.Run(); in BOOST_AUTO_TEST_CASE()
1198 CPssmEngine pssm_engine(bad_pssm_data.get()); in BOOST_AUTO_TEST_CASE() local
1199 BOOST_REQUIRE_THROW(pssm_engine.Run(), CBlastException); in BOOST_AUTO_TEST_CASE()
1204 CPssmEngine pssm_engine(bad_pssm_data.get()); in BOOST_AUTO_TEST_CASE() local
1205 BOOST_REQUIRE_THROW(pssm_engine.Run(), CBlastException); in BOOST_AUTO_TEST_CASE()
1215 BOOST_REQUIRE_THROW(CPssmEngine pssm_engine(null_ptr), CPssmEngineException); in BOOST_AUTO_TEST_CASE()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/api/
H A Dpssmenginefreqratios_unit_test.cpp66 CPssmEngine pssm_engine(null_ptr); in createNullPssmInputFreqRatios() local
90 CPssmEngine pssm_engine(pssm_input.get()); in BOOST_AUTO_TEST_CASE() local
92 (CScorematPssmConverter::GetScores(*pssm_engine.Run())); in BOOST_AUTO_TEST_CASE()
134 CPssmEngine pssm_engine(&pssm_input); in BOOST_AUTO_TEST_CASE() local
135 CRef<objects::CPssmWithParameters> pssm_w_param = pssm_engine.Run(); in BOOST_AUTO_TEST_CASE()
H A Dpssmcreate_cdd_unit_test.cpp408 CPssmEngine pssm_engine(&pssm_input); in BOOST_AUTO_TEST_CASE() local
409 BOOST_REQUIRE_THROW(pssm_engine.Run(), CBlastException); in BOOST_AUTO_TEST_CASE()
417 CPssmEngine pssm_engine(&pssm_input); in BOOST_AUTO_TEST_CASE() local
418 BOOST_REQUIRE_THROW(pssm_engine.Run(), CBlastException); in BOOST_AUTO_TEST_CASE()
425 CPssmEngine pssm_engine(&pssm_input); in BOOST_AUTO_TEST_CASE() local
426 BOOST_REQUIRE_THROW(pssm_engine.Run(), CBlastException); in BOOST_AUTO_TEST_CASE()
433 CPssmEngine pssm_engine(&pssm_input); in BOOST_AUTO_TEST_CASE() local
930 CPssmEngine pssm_engine(pssm_input); in BOOST_AUTO_TEST_CASE() local
931 CRef<CPssmWithParameters> pssm = pssm_engine.Run(); in BOOST_AUTO_TEST_CASE()
1011 CPssmEngine pssm_engine(pssm_input); in BOOST_AUTO_TEST_CASE() local
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H A Dpssmcreate_unit_test.cpp610 CRef<CPssmEngine> pssm_engine(new CPssmEngine(pssm_strategy)); in BOOST_FIXTURE_TEST_SUITE() local
611 CRef<CPssmWithParameters> pssm = pssm_engine->Run(); in BOOST_FIXTURE_TEST_SUITE()
673 CPssmEngine pssm_engine(pssm_input.get()); in BOOST_AUTO_TEST_CASE() local
807 CPssmEngine pssm_engine(pssm_input.get()); in BOOST_AUTO_TEST_CASE() local
808 CRef<CPssmWithParameters> pssm_asn = pssm_engine.Run(); in BOOST_AUTO_TEST_CASE()
1198 CPssmEngine pssm_engine(bad_pssm_data.get()); in BOOST_AUTO_TEST_CASE() local
1199 BOOST_REQUIRE_THROW(pssm_engine.Run(), CBlastException); in BOOST_AUTO_TEST_CASE()
1204 CPssmEngine pssm_engine(bad_pssm_data.get()); in BOOST_AUTO_TEST_CASE() local
1205 BOOST_REQUIRE_THROW(pssm_engine.Run(), CBlastException); in BOOST_AUTO_TEST_CASE()
1215 BOOST_REQUIRE_THROW(CPssmEngine pssm_engine(null_ptr), CPssmEngineException); in BOOST_AUTO_TEST_CASE()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/api/
H A Ddeltablast.cpp128 CRef<CPssmEngine> pssm_engine; in Run() local
129 pssm_engine.Reset(new CPssmEngine(pssm_input.GetNonNullPointer())); in Run()
132 m_Pssm.push_back(pssm_engine->Run()); in Run()
H A DMakefile.xblast.lib.unix13 psiblast_aux_priv.o pssm_engine.o: %.o: $(srcdir)/%.cpp
H A Dpsiblast_aux_priv.cpp484 CPssmEngine pssm_engine(&pssm_engine_input); in PsiBlastComputePssmScores() local
485 CRef<CPssmWithParameters> pssm_with_scores(pssm_engine.Run()); in PsiBlastComputePssmScores()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/api/
H A Ddeltablast.cpp128 CRef<CPssmEngine> pssm_engine; in Run() local
129 pssm_engine.Reset(new CPssmEngine(pssm_input.GetNonNullPointer())); in Run()
132 m_Pssm.push_back(pssm_engine->Run()); in Run()
H A DMakefile.xblast.lib.unix12 psiblast_aux_priv.o pssm_engine.o: %.o: $(srcdir)/%.cpp
H A Dpsiblast_aux_priv.cpp484 CPssmEngine pssm_engine(&pssm_engine_input); in PsiBlastComputePssmScores() local
485 CRef<CPssmWithParameters> pssm_with_scores(pssm_engine.Run()); in PsiBlastComputePssmScores()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/app/blastdb/
H A Dmakeprofiledb.cpp888 CPssmEngine pssm_engine(&pssm_freq_ratio); in x_RPSUpdateStatistics() local
889 CRef<CPssmWithParameters> out_par(pssm_engine.Run()); in x_RPSUpdateStatistics()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/blastdb/
H A Dmakeprofiledb.cpp888 CPssmEngine pssm_engine(&pssm_freq_ratio); in x_RPSUpdateStatistics() local
889 CRef<CPssmWithParameters> out_par(pssm_engine.Run()); in x_RPSUpdateStatistics()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/blastinput/
H A Dblast_args.cpp1233 CPssmEngine pssm_engine(&pssm_input); in x_CreatePssmFromMsa() local
1234 return pssm_engine.Run(); in x_CreatePssmFromMsa()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/blastinput/
H A Dblast_args.cpp1233 CPssmEngine pssm_engine(&pssm_input); in x_CreatePssmFromMsa() local
1234 return pssm_engine.Run(); in x_CreatePssmFromMsa()