Searched refs:q_beg (Results 1 – 7 of 7) sorted by relevance
/dports/audio/praat/praat-6.2.03/external/glpk/ |
H A D | glpluf.c | 1009 q_beg = vc_ptr[q]; in eliminate() 1010 q_end = q_beg + vc_len[q] - 1; in eliminate() 1047 while (q_beg <= q_end) in eliminate() 1050 i = sv_ind[q_beg]; in eliminate() 1075 sv_ind[q_beg] = sv_ind[q_end]; in eliminate() 1134 q_beg = vc_ptr[q]; in eliminate() 1135 q_end = q_beg + vc_len[q] - 1; in eliminate() 1185 q_beg = vc_ptr[q]; in eliminate() 1186 q_end = q_beg + vc_len[q] - 1; in eliminate() 1216 q_beg = vc_ptr[q]; in eliminate() [all …]
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/dports/biology/ncbi-toolkit/ncbi/tools/ |
H A D | dotseq.c | 437 Uint1Ptr q_end,s, q, end, start, q_beg; in DOT_ExtendProt() local 492 q_beg=q; in DOT_ExtendProt() 533 length = q_end - q_beg; in DOT_ExtendProt() 541 q_start = q_beg- queryseq; in DOT_ExtendProt() 542 length = q_end - q_beg; in DOT_ExtendProt() 567 Uint1Ptr q_end, s, q, end, start, q_beg; in DOT_ExtendNuc() local 622 q_beg=q; in DOT_ExtendNuc() 667 length = q_end - q_beg; in DOT_ExtendNuc() 677 q_left = q_beg- queryseq; in DOT_ExtendNuc() 678 length = q_end - q_beg; in DOT_ExtendNuc()
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H A D | blast.c | 8513 q = q_beg = q_end = query0 + q_off; in BlastNtWordUngappedExtend() 8539 q_beg = q; in BlastNtWordUngappedExtend() 8628 q = q_beg = q_end = query0 + q_off; in BlastNtWordExtend() 8649 q_beg = q; in BlastNtWordExtend() 8657 q_beg = q; in BlastNtWordExtend() 8665 q_beg = q; in BlastNtWordExtend() 8673 q_beg = q; in BlastNtWordExtend() 8691 q_beg = q; in BlastNtWordExtend() 8798 (q_end-q_beg), context, in BlastNtWordExtend() 8802 (q_beg-query0), in BlastNtWordExtend() [all …]
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/dports/biology/ncbi-toolkit/ncbi/algo/blast/core/ |
H A D | na_ungapped.c | 157 Uint1 *subject0, *sf, *q_beg, *q_end, *s, *start; in s_NuclUngappedExtendExact() local 167 q = q_beg = q_end = query->sequence + q_off; in s_NuclUngappedExtendExact() 198 q_beg = q; in s_NuclUngappedExtendExact() 206 ungapped_data->q_start = q_beg - query->sequence; in s_NuclUngappedExtendExact() 238 ungapped_data->length = q_end - q_beg; in s_NuclUngappedExtendExact()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/core/ |
H A D | na_ungapped.c | 157 Uint1 *subject0, *sf, *q_beg, *q_end, *s, *start; in s_NuclUngappedExtendExact() local 167 q = q_beg = q_end = query->sequence + q_off; in s_NuclUngappedExtendExact() 198 q_beg = q; in s_NuclUngappedExtendExact() 206 ungapped_data->q_start = q_beg - query->sequence; in s_NuclUngappedExtendExact() 241 ungapped_data->length = q_end - q_beg; in s_NuclUngappedExtendExact()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/core/ |
H A D | na_ungapped.c | 157 Uint1 *subject0, *sf, *q_beg, *q_end, *s, *start; in s_NuclUngappedExtendExact() local 167 q = q_beg = q_end = query->sequence + q_off; in s_NuclUngappedExtendExact() 198 q_beg = q; in s_NuclUngappedExtendExact() 206 ungapped_data->q_start = q_beg - query->sequence; in s_NuclUngappedExtendExact() 241 ungapped_data->length = q_end - q_beg; in s_NuclUngappedExtendExact()
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/dports/biology/stacks/stacks-2.4/src/ |
H A D | cstacks.cc | 214 const char *q_beg = q; in characterize_mismatch_snps() local 237 s->col = q - q_beg; in characterize_mismatch_snps()
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