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Searched refs:q_beg (Results 1 – 7 of 7) sorted by relevance

/dports/audio/praat/praat-6.2.03/external/glpk/
H A Dglpluf.c1009 q_beg = vc_ptr[q]; in eliminate()
1010 q_end = q_beg + vc_len[q] - 1; in eliminate()
1047 while (q_beg <= q_end) in eliminate()
1050 i = sv_ind[q_beg]; in eliminate()
1075 sv_ind[q_beg] = sv_ind[q_end]; in eliminate()
1134 q_beg = vc_ptr[q]; in eliminate()
1135 q_end = q_beg + vc_len[q] - 1; in eliminate()
1185 q_beg = vc_ptr[q]; in eliminate()
1186 q_end = q_beg + vc_len[q] - 1; in eliminate()
1216 q_beg = vc_ptr[q]; in eliminate()
[all …]
/dports/biology/ncbi-toolkit/ncbi/tools/
H A Ddotseq.c437 Uint1Ptr q_end,s, q, end, start, q_beg; in DOT_ExtendProt() local
492 q_beg=q; in DOT_ExtendProt()
533 length = q_end - q_beg; in DOT_ExtendProt()
541 q_start = q_beg- queryseq; in DOT_ExtendProt()
542 length = q_end - q_beg; in DOT_ExtendProt()
567 Uint1Ptr q_end, s, q, end, start, q_beg; in DOT_ExtendNuc() local
622 q_beg=q; in DOT_ExtendNuc()
667 length = q_end - q_beg; in DOT_ExtendNuc()
677 q_left = q_beg- queryseq; in DOT_ExtendNuc()
678 length = q_end - q_beg; in DOT_ExtendNuc()
H A Dblast.c8513 q = q_beg = q_end = query0 + q_off; in BlastNtWordUngappedExtend()
8539 q_beg = q; in BlastNtWordUngappedExtend()
8628 q = q_beg = q_end = query0 + q_off; in BlastNtWordExtend()
8649 q_beg = q; in BlastNtWordExtend()
8657 q_beg = q; in BlastNtWordExtend()
8665 q_beg = q; in BlastNtWordExtend()
8673 q_beg = q; in BlastNtWordExtend()
8691 q_beg = q; in BlastNtWordExtend()
8798 (q_end-q_beg), context, in BlastNtWordExtend()
8802 (q_beg-query0), in BlastNtWordExtend()
[all …]
/dports/biology/ncbi-toolkit/ncbi/algo/blast/core/
H A Dna_ungapped.c157 Uint1 *subject0, *sf, *q_beg, *q_end, *s, *start; in s_NuclUngappedExtendExact() local
167 q = q_beg = q_end = query->sequence + q_off; in s_NuclUngappedExtendExact()
198 q_beg = q; in s_NuclUngappedExtendExact()
206 ungapped_data->q_start = q_beg - query->sequence; in s_NuclUngappedExtendExact()
238 ungapped_data->length = q_end - q_beg; in s_NuclUngappedExtendExact()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/core/
H A Dna_ungapped.c157 Uint1 *subject0, *sf, *q_beg, *q_end, *s, *start; in s_NuclUngappedExtendExact() local
167 q = q_beg = q_end = query->sequence + q_off; in s_NuclUngappedExtendExact()
198 q_beg = q; in s_NuclUngappedExtendExact()
206 ungapped_data->q_start = q_beg - query->sequence; in s_NuclUngappedExtendExact()
241 ungapped_data->length = q_end - q_beg; in s_NuclUngappedExtendExact()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/core/
H A Dna_ungapped.c157 Uint1 *subject0, *sf, *q_beg, *q_end, *s, *start; in s_NuclUngappedExtendExact() local
167 q = q_beg = q_end = query->sequence + q_off; in s_NuclUngappedExtendExact()
198 q_beg = q; in s_NuclUngappedExtendExact()
206 ungapped_data->q_start = q_beg - query->sequence; in s_NuclUngappedExtendExact()
241 ungapped_data->length = q_end - q_beg; in s_NuclUngappedExtendExact()
/dports/biology/stacks/stacks-2.4/src/
H A Dcstacks.cc214 const char *q_beg = q; in characterize_mismatch_snps() local
237 s->col = q - q_beg; in characterize_mismatch_snps()