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/dports/biology/gmap/gmap-2020-09-12/src/
H A Dunivdiag.c20 Univdiag_new (int qstart, int qend, Univcoord_T univdiagonal) {
23 assert(qend > qstart);
27 new->qend = qend;
70 new->qend = qend + indexsize - 1;
129 length += this->qend - this->qstart + 1; in Univdiag_list_length()
144 } else if (x->qend < y->qend) { in Univdiag_ascending_cmp()
146 } else if (y->qend < x->qend) { in Univdiag_ascending_cmp()
167 } else if (x->qend > y->qend) { in Univdiag_descending_cmp()
169 } else if (y->qend > x->qend) { in Univdiag_descending_cmp()
195 } else if (x->qend < y->qend) { in Univdiag_diagonal_cmp()
[all …]
H A Dextension-search.c847 } else if (elt->qend >= middle->qend) {
1501 qend = left_univdiagonal_array[i]->qend; in process_seed()
1508 if (left_univdiagonal_array[j]->qend > qend) { in process_seed()
1509 qend = left_univdiagonal_array[j]->qend; in process_seed()
1515 left_univdiagonal_array[i]->qend = qend; in process_seed()
1543 qend = right_univdiagonal_array[j]->qend; in process_seed()
1630 qend = max(queryfwd_best_elt->qend,queryrev_best_elt->qend); in extend_seeds()
1636 qend = queryfwd_best_elt->qend; in extend_seeds()
1642 qend = queryrev_best_elt->qend; in extend_seeds()
1659 qend = queryfwd_best_elt->qend; in extend_seeds()
[all …]
H A Dunivdiagpool.c150 Univdiag_new (T this, int qstart, int qend, Univcoord_T univdiagonal) { in Univdiag_new() argument
168 univdiag->qend = qend; in Univdiag_new()
172 assert(qstart < qend); in Univdiag_new()
179 Univdiagpool_push (List_T list, T this, int qstart, int qend, Univcoord_T univdiagonal) { in Univdiagpool_push() argument
198 univdiag->qend = qend; in Univdiagpool_push()
202 assert(qstart < qend); in Univdiagpool_push()
/dports/mail/rspamd-devel/rspamd-93430bb/src/ragel/
H A Dcontent_disposition_parser.rl21 qend = NULL;
30 if (qend && qend >= qstart) {
31 pname_end = qend;
37 qend = NULL;
43 qend = NULL;
57 if (qend && qend >= qstart) {
58 pvalue_end = qend;
64 qend = NULL;
75 qend = NULL;
81 qend = NULL;
[all …]
/dports/mail/rspamd/rspamd-3.1/src/ragel/
H A Dcontent_disposition_parser.rl21 qend = NULL;
30 if (qend && qend >= qstart) {
31 pname_end = qend;
37 qend = NULL;
43 qend = NULL;
57 if (qend && qend >= qstart) {
58 pvalue_end = qend;
64 qend = NULL;
75 qend = NULL;
81 qend = NULL;
[all …]
/dports/print/cups/cups-2.3.3op2/cgi-bin/
H A Dsearch.c32 *qend; /* End of current word */ in cgiCompileSearch() local
102 for (qend = qptr; *qend && *qend != quoted; qend ++); in cgiCompileSearch()
104 if (!*qend) in cgiCompileSearch()
126 for (qend = qptr + 1; *qend && !isspace(*qend); qend ++); in cgiCompileSearch()
129 wlen = (size_t)(qend - qptr); in cgiCompileSearch()
144 qptr = qend; in cgiCompileSearch()
155 qptr = qend; in cgiCompileSearch()
208 while (qptr < qend) in cgiCompileSearch()
/dports/finance/beanie/beanie-0.8.2/overnight/
H A Dovernight.c353 qend[3] = getyend(cp); in main()
354 if ((qend[2] = qend[3] - 3) < 1) in main()
355 qend[2] += 12; in main()
356 if ((qend[1] = qend[2] - 3) < 1) in main()
357 qend[1] += 12; in main()
358 if ((qend[0] = qend[1] - 3) < 1) in main()
359 qend[0] += 12; in main()
378 if (m == qend[0]) in main()
380 else if (m == qend[1]) in main()
382 else if (m == qend[2]) in main()
[all …]
/dports/x11-wm/openbox/openbox-3.6/obt/
H A Dxqueue.c37 qend = -1; in shrink()
45 qend = qnum - 1; in shrink()
58 else if (qend >= newsz) { in shrink()
62 qend = n - 1; in shrink()
80 for (i = 0; i <= qend; ++i) in grow()
82 qend = qsz + qend; in grow()
106 qend = (qend + 1) % qsz; /* move the end */ in read_events()
122 qend = -1; in pop()
146 while (pi != qend) { in pop()
152 qend = (qend == 0 ? qsz-1 : qend-1); in pop()
[all …]
/dports/science/lammps/lammps-stable_29Sep2021/tools/phonon/
H A Ddisp.cpp37 double qstr[3], qend[3]; in pdisp() local
39 qend[0] = qend[1] = qend[2] = 0.; in pdisp()
46 for (int i = 0; i < 3; ++i) qstr[i] = qend[i]; in pdisp()
61 qend[0] = atof(strtok(str, " \t\n\r\f")); in pdisp()
62 qend[1] = atof(strtok(NULL, " \t\n\r\f")); in pdisp()
63 qend[2] = atof(strtok(NULL, " \t\n\r\f")); in pdisp()
74 for (int i = 0; i < 3; ++i) qtmp[i] = qend[i]; in pdisp()
101 double *qend = qnodes->qe[is]; in pdisp() local
103 for (int i = 0; i < 3; ++i) qinc[i] = (qend[i]-qstr[i])/double(nbin-1); in pdisp()
123 delete []qend; in pdisp()
/dports/biology/bwa/bwa-0.7.17/
H A Dbwtsw2_chain.c10 int qbeg, qend; member
31 if (p->qend > q->qend) q->qend = p->qend; in KSORT_INIT()
65 q->qbeg = p->beg; q->qend = p->end; in bsw2_chain_filter()
76 p->qbeg = len - p->qend; p->qend = len - tmp; in bsw2_chain_filter()
87 if (q->qend >= p->qend && q->chain > p->chain * thres && p->chain < thres) { in bsw2_chain_filter()
/dports/net/mpich/mpich-3.4.3/modules/ucx/src/uct/ib/mlx5/
H A Dib_mlx5_log.c18 void *qend, int max_sge, int dump_qp,
158 if (*dseg_p == qend) { in uct_ib_mlx5_parse_dseg()
167 if (UCS_PTR_BYTE_OFFSET(addr, byte_count) > qend) { in uct_ib_mlx5_parse_dseg()
168 sg->length = UCS_PTR_BYTE_DIFF(addr, qend); in uct_ib_mlx5_parse_dseg()
191 if (*dseg_p >= qend) { in uct_ib_mlx5_parse_dseg()
318 if (seg == qend) { in uct_ib_mlx5_wqe_dump()
330 if (seg == qend) { in uct_ib_mlx5_wqe_dump()
342 if (seg == qend) { in uct_ib_mlx5_wqe_dump()
360 if (seg == qend) { in uct_ib_mlx5_wqe_dump()
384 if (seg == qend) { in uct_ib_mlx5_wqe_dump()
[all …]
/dports/finance/beanie/beanie-0.8.2/lib/
H A Dgetyend.c85 getqends(struct db_company *cp, int qend[]) in getqends() argument
90 qend[i] = yend; in getqends()
100 whichquarter(int mon, int qend[]) in whichquarter() argument
104 qs = qend[3] + 1; in whichquarter()
105 qe = qend[0]; in whichquarter()
/dports/biology/emboss/EMBOSS-6.6.0/ajax/ensembl/
H A Densqcalignment.c546 qca->QueryEnd = qend; in ensQcalignmentNewIni()
1278 qca->QueryEnd = qend; in ensQcalignmentSetQueryEnd()
1885 ajint qend = 0; in ensQcalignmentCalculateQueryCoverageDnaDna() local
1986 if (qend >= (ajint) qlength) in ensQcalignmentCalculateQueryCoverageDnaDna()
2101 ajint qend = 0; in ensQcalignmentCalculateQueryCoverageDnaGenome() local
2151 if (qend >= (ajint) qlength) in ensQcalignmentCalculateQueryCoverageDnaGenome()
2220 ajint qend = 0; in ensQcalignmentCalculateQueryCoverageProteinGenome() local
2264 if (qend == (ajint) qlength) in ensQcalignmentCalculateQueryCoverageProteinGenome()
2341 ajint qend = 0; in ensQcalignmentCalculateQueryCoverageProteinProtein() local
3237 ajuint qend = 0U; in qcalignmentadaptorFetchAllbyStatement() local
[all …]
/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/Tools/
H A DEst2Genome.pm189 my ($name,$score,$perc_ident,$qstart,$qend,$qseqname,
196 -end => $qend,
223 my ($name,$score,$perc_ident,$qstart,$qend,$qseqname) = split;
227 -end => $qend,
266 my ($name,$score,$perc_ident,$qstart,$qend,$qseqname,$hstart,$hend, $hseqname) = split;
272 -end => $qend,
289 my ($name,$score,$perc_ident,$qstart,$qend,$qseqname,$hstart,$hend, $hseqname) = split;
294 -end => $qend,
/dports/net-im/prosody-modules/Community-Modules-bb8459c220c9/mod_mam/
H A Dfallback_archive.lib.lua28 local qstart, qend, qwith = -math.huge, math.huge;
43 qend = query["end"] or qend;
50 if (not qwith or qwith == item.with) and item.when >= qstart and item.when <= qend then
69 local qend = query["end"] or math.huge;
76 if not ((not qwith or qwith == item.with) and item.when >= qstart and item.when <= qend) then
/dports/biology/abyss/abyss-2.3.1/Common/
H A DAlignment.h62 unsigned qend = read_start_pos + align_length; in flipQuery() local
63 assert(qend <= (unsigned)read_length); in flipQuery()
64 rc.read_start_pos = read_length - qend; in flipQuery()
72 unsigned qend = read_start_pos + align_length; in calculateReverseReadStart() local
73 return read_length - qend; in calculateReverseReadStart()
/dports/biology/cd-hit/cdhit-4.8.1/psi-cd-hit/
H A Dpsi-2d.pl130 … if (overlap1($p->{qfrom}, $p->{qend}, $hsp[$j]->[2], $hsp[$j]->[3])) { $overlap_flag = 1; last; }
138 if (cross1($p->{qfrom}, $p->{qend}, $hsp[$j]->[2], $hsp[$j]->[3],
145 …push(@hsp, [$id1, $len_sub, $p->{qfrom}, $p->{qend}, $p->{sfrom}, $p->{send}, $p->{expect}, $p->{f…
261 … my $ref_q = ($p_top_hsp->{qfrom} < $p_top_hsp->{qend}) ? $p_top_hsp->{qfrom} : $p_top_hsp->{qend};
265 …$self->{sbj}->[$k]->{qend} -= $ref_q; if ($self->{sbj}->[$k]->{qend} < 0) {$self->{sbj}->[$k]->{…
282 … my $ref_q = ($p_top_hsp->{qfrom} < $p_top_hsp->{qend}) ? $p_top_hsp->{qfrom} : $p_top_hsp->{qend};
286 …$self->{sbj}->[$k]->{qend} -= $ref_q; if ($self->{sbj}->[$k]->{qend} < 0) {$self->{sbj}->[$k]->{…
/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/SearchIO/
H A Dwaba.pm170 $alnlen,$qdb,$qacc,$qstart,$qend,$qstrand,
188 if( $qend < 0 ) { $qend *= -1}
189 $hstart++; $hend++; $qstart++; $qend++;
238 ($qstart,$qend) = ($qend,$qstart);
248 'Data' => $qend});
/dports/devel/ncurses/ncurses-6.3/ncurses/tinfo/
H A Dcomp_parse.c108 char *pstart, *qstart, *pend, *qend; in check_collisions() local
123 for (qstart = n2; (qend = strchr(qstart, '|')); qstart = qend + 1) { in check_collisions()
124 if ((pend - pstart == qend - qstart) in check_collisions()
165 char *pstart, *qstart, *pend, *qend; in remove_collision() local
176 for (qstart = n2; (qend = name_ending(qstart)); qstart = next_name(qend)) { in remove_collision()
177 if ((pend - pstart == qend - qstart) in remove_collision()
179 if (qstart != p2 || *qend == '|') { in remove_collision()
180 if (*qend == '|') in remove_collision()
181 ++qend; in remove_collision()
182 while ((*qstart++ = *qend++) != '\0') ; in remove_collision()
[all …]
/dports/biology/seqan1/seqan-1.3.1/lib/samtools/misc/
H A Dblast2sam.pl13 my ($qlen, $slen, $q, $s, $qbeg, $qend, @sam, @cigar, @cmaux, $show_seq);
18 &blast_print_sam(\@sam, \@cigar, \@cmaux, $qlen - $qend);
43 $qend = $3;
58 &blast_print_sam(\@sam, \@cigar, \@cmaux, $qlen - $qend);
/dports/converters/p5-Boulder/Boulder-1.30/Boulder/Blast/
H A DWU.pm111 my ($qstart,$qend,$tstart,$tend);
135 Query_end => $qend,
138 Length => 1 + $qend - $qstart,
147 ($qstart,$qend,$tstart,$tend) = (undef,undef,undef,undef); # undef all
211 $qend = $3;
/dports/biology/samtools/samtools-1.14/misc/
H A Dblast2sam.pl38 my ($qlen, $slen, $q, $s, $qbeg, $qend, @sam, @cigar, @cmaux, $show_seq);
44 &blast_print_sam(\@sam, \@cigar, \@cmaux, $qlen - $qend);
75 $qend = $3;
91 &blast_print_sam(\@sam, \@cigar, \@cmaux, $qlen - $qend); # the last argument may be a problem
/dports/biology/abyss/abyss-2.3.1/bin/
H A Dabyss-samtoafg125 my $qend = $qlength - $clipRight;
126 die unless $qstart < $qend;
128 my $clr = $rc ? "$qend,$qstart" : "$qstart,$qend";
/dports/audio/praat/praat-6.2.03/LPC/
H A DPowerCepstrum.cpp97 qend = ( qend == 0 ? my xmax : qend ); in SetMemN()
98 if (qend <= qstart) { in SetMemN()
99 qend = my xmax; in SetMemN()
103 Melder_clipRight (& qend, my xmax); in SetMemN()
106 PowerCepstrum_fitTrendLine (me, qstart, qend, & a, & intercept, lineType, method); in SetMemN()
114 const double dq = (qend - qstart) / (n + 1); in SetMemN()
129 const double y2 = a * qend + intercept; in SetMemN()
131 Graphics_line (g, qstart, y1, qend, y2); in SetMemN()
134 Graphics_line (g, qstart, dBminimum, qend, y2); in SetMemN()
136 qend = (dBminimum - intercept) / a; in SetMemN()
[all …]
/dports/net-im/prosody-modules/Community-Modules-bb8459c220c9/mod_mam_muc/
H A Dmod_mam_muc.lua188 local qstart, qend;
197 qstart, qend = form["start"], form["end"];
200 if qstart or qend then -- Validate timestamps
201 local vstart, vend = (qstart and timestamp_parse(qstart)), (qend and timestamp_parse(qend))
202 if (qstart and not vstart) or (qend and not vend) then
206 qstart, qend = vstart, vend;
212 qend and timestamp(qend) or "now");
224 start = qstart; ["end"] = qend; -- Time range

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