Searched refs:qopens2 (Results 1 – 2 of 2) sorted by relevance
| /dports/biology/gmap/gmap-2020-09-12/src/ |
| H A D | stage3.h | 345 int *unknowns2, int *mismatches2, int *qopens2, int *qindels2, int *topens2, int *tindels2,
374 int *unknowns2, int *mismatches2, int *qopens2, int *qindels2, int *topens2, int *tindels2,
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| H A D | stage3.c | 890 int unknowns2, mismatches2, qopens2, qindels2, topens2, tindels2, in Stage3_chimeric_goodness() local
905 …Pair_fracidentity_bounded(&(*matches2),&unknowns2,&mismatches2,&qopens2,&qindels2,&topens2,&tindel… in Stage3_chimeric_goodness()
909 …goodness2 = (*matches2) + MISMATCH*mismatches2 + QOPEN*qopens2 + QINDEL*qindels2 + TOPEN*topens2 +… in Stage3_chimeric_goodness()
911 *matches2,mismatches2,qopens2,qindels2,topens2,tindels2,goodness2)); in Stage3_chimeric_goodness()
15834 int *unknowns2, int *mismatches2, int *qopens2, int *qindels2, int *topens2, int *tindels2, in Stage3_compute_ends() argument
16589 &(*qopens2),&(*qindels2),&(*topens2),&(*tindels2), in Stage3_compute_ends()
16595 *npairs2,*matches2,*mismatches2,*qopens2,*qindels2,*topens2,*tindels2,*avg_splice_score_2)); in Stage3_compute_ends()
16720 int *unknowns2, int *mismatches2, int *qopens2, int *qindels2, int *topens2, int *tindels2, in Stage3_compute_one() argument
17383 &(*qopens2),&(*qindels2),&(*topens2),&(*tindels2), in Stage3_compute_one()
17389 *npairs2,*matches2,*mismatches2,*qopens2,*qindels2,*topens2,*tindels2,*avg_splice_score_2)); in Stage3_compute_one()
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