Home
last modified time | relevance | path

Searched refs:query3_compress_rev (Results 1 – 6 of 6) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A Dconcordance.c127 Compress_T query3_compress_fwd, Compress_T query3_compress_rev,
229 Compress_T query3_compress_fwd, Compress_T query3_compress_rev,
330 Compress_T query3_compress_fwd, Compress_T query3_compress_rev,
431 Compress_T query3_compress_fwd, Compress_T query3_compress_rev, in do_genome_plus() argument
562 Compress_T query3_compress_fwd, Compress_T query3_compress_rev, in do_genome_minus() argument
700 Compress_T query3_compress_fwd, Compress_T query3_compress_rev, in Concordance_pair_up_genome() argument
970 Compress_T query3_compress_fwd, Compress_T query3_compress_rev, in do_distant_plus_plus() argument
1120 Compress_T query3_compress_fwd, Compress_T query3_compress_rev, in do_distant_minus_minus() argument
1269 Compress_T query3_compress_fwd, Compress_T query3_compress_rev, in do_distant_plus_minus() argument
1389 Compress_T query3_compress_fwd, Compress_T query3_compress_rev, in do_distant_minus_plus() argument
[all …]
H A Dconcordance.h34 Compress_T query3_compress_fwd, Compress_T query3_compress_rev,
52 Compress_T query3_compress_fwd, Compress_T query3_compress_rev,
H A Dstage1hr.c1639 Compress_T query3_compress_fwd, Compress_T query3_compress_rev, in paired_read_segment_search() argument
1870 query3_compress_fwd,query3_compress_rev, in paired_read_segment_search()
1909 query3_compress_fwd,query3_compress_rev, in paired_read_segment_search()
2050 query3_compress_fwd,query3_compress_rev,querylength3, in paired_read_segment_search()
2226 Compress_T query3_compress_fwd, Compress_T query3_compress_rev, in paired_read() argument
2362 query3_compress_fwd,query3_compress_rev, in paired_read()
2622 query3_compress_fwd,query3_compress_rev, in consolidate_paired_results()
2902 query3_compress_fwd,query3_compress_rev, in Stage1_paired_read()
2942 query3_compress_fwd,query3_compress_rev, in Stage1_paired_read()
2956 query3_compress_fwd,query3_compress_rev, in Stage1_paired_read()
[all …]
H A Dstage3hr.h441 Compress_T query3_compress_fwd, Compress_T query3_compress_rev,
H A Dkmer-search.c4702 Compress_T query3_compress_fwd, Compress_T query3_compress_rev,
4774 query3_compress_fwd,query3_compress_rev,
4797 query3_compress_fwd,query3_compress_rev,
4826 querylength3,query3_compress_rev,nmismatches_allowed_3,
4845 querylength3,query3_compress_rev,nmismatches_allowed_3,
H A Dstage3hr.c11310 Compress_T query3_compress_fwd, Compress_T query3_compress_rev, in Stage3pair_new() argument
11636 resolve_ambiguity_3(hit3,mismatch_positions_alloc_3,query3_compress_rev,alts_resolve_3); in Stage3pair_new()