/dports/biology/hhsuite/hh-suite-3.3.0/src/cs/ |
H A D | pssm.h | 41 int query_length = 0; in Read() local 45 assert(query_length > 0); in Read() 47 query.Resize(query_length); in Read() 48 profile.Resize(query_length); in Read() 50 for (int i = 0; i < query_length; ++i) { in Read() 57 for(int i = 0; i < query_length; ++i) { in Read() 64 assert_eq(1 + query_length + query_length * AA::kSize, count); in Read() 73 int query_length = query.length(); in Write() local 77 for(int i = 0; i < query_length; ++i) { in Write() 82 for(int i = 0; i < query_length; ++i) { in Write() [all …]
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/dports/databases/mariadb104-server/mariadb-10.4.24/storage/mroonga/lib/ |
H A D | mrn_query_parser.cpp | 58 query_length, in parse() 80 static_cast<int>(query_length), in parse() 113 size_t current_query_length = query_length; in parse_pragma() 126 *raw_query_length = query_length; in parse_pragma() 205 while (query_length >= 1) { in parse_pragma_w() 212 query_length -= n_used_query_length; in parse_pragma_w() 214 if (query_length == 0) { in parse_pragma_w() 235 query_length -= n_used_query_length; in parse_pragma_w() 242 if (query_length >= 2 && query[0] == ':') { in parse_pragma_w() 252 query_length -= n_used_query_length; in parse_pragma_w() [all …]
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/dports/databases/mariadb104-client/mariadb-10.4.24/storage/mroonga/lib/ |
H A D | mrn_query_parser.cpp | 58 query_length, in parse() 80 static_cast<int>(query_length), in parse() 113 size_t current_query_length = query_length; in parse_pragma() 126 *raw_query_length = query_length; in parse_pragma() 205 while (query_length >= 1) { in parse_pragma_w() 212 query_length -= n_used_query_length; in parse_pragma_w() 214 if (query_length == 0) { in parse_pragma_w() 235 query_length -= n_used_query_length; in parse_pragma_w() 242 if (query_length >= 2 && query[0] == ':') { in parse_pragma_w() 252 query_length -= n_used_query_length; in parse_pragma_w() [all …]
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/dports/databases/mariadb103-client/mariadb-10.3.34/storage/mroonga/lib/ |
H A D | mrn_query_parser.cpp | 58 query_length, in parse() 80 static_cast<int>(query_length), in parse() 113 size_t current_query_length = query_length; in parse_pragma() 126 *raw_query_length = query_length; in parse_pragma() 205 while (query_length >= 1) { in parse_pragma_w() 212 query_length -= n_used_query_length; in parse_pragma_w() 214 if (query_length == 0) { in parse_pragma_w() 235 query_length -= n_used_query_length; in parse_pragma_w() 242 if (query_length >= 2 && query[0] == ':') { in parse_pragma_w() 252 query_length -= n_used_query_length; in parse_pragma_w() [all …]
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/dports/databases/mariadb105-client/mariadb-10.5.15/storage/mroonga/lib/ |
H A D | mrn_query_parser.cpp | 58 query_length, in parse() 80 static_cast<int>(query_length), in parse() 113 size_t current_query_length = query_length; in parse_pragma() 126 *raw_query_length = query_length; in parse_pragma() 205 while (query_length >= 1) { in parse_pragma_w() 212 query_length -= n_used_query_length; in parse_pragma_w() 214 if (query_length == 0) { in parse_pragma_w() 235 query_length -= n_used_query_length; in parse_pragma_w() 242 if (query_length >= 2 && query[0] == ':') { in parse_pragma_w() 252 query_length -= n_used_query_length; in parse_pragma_w() [all …]
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/dports/databases/mariadb103-server/mariadb-10.3.34/storage/mroonga/lib/ |
H A D | mrn_query_parser.cpp | 58 query_length, in parse() 80 static_cast<int>(query_length), in parse() 113 size_t current_query_length = query_length; in parse_pragma() 126 *raw_query_length = query_length; in parse_pragma() 205 while (query_length >= 1) { in parse_pragma_w() 212 query_length -= n_used_query_length; in parse_pragma_w() 214 if (query_length == 0) { in parse_pragma_w() 235 query_length -= n_used_query_length; in parse_pragma_w() 242 if (query_length >= 2 && query[0] == ':') { in parse_pragma_w() 252 query_length -= n_used_query_length; in parse_pragma_w() [all …]
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/dports/databases/mariadb105-server/mariadb-10.5.15/storage/mroonga/lib/ |
H A D | mrn_query_parser.cpp | 58 query_length, in parse() 80 static_cast<int>(query_length), in parse() 113 size_t current_query_length = query_length; in parse_pragma() 126 *raw_query_length = query_length; in parse_pragma() 205 while (query_length >= 1) { in parse_pragma_w() 212 query_length -= n_used_query_length; in parse_pragma_w() 214 if (query_length == 0) { in parse_pragma_w() 235 query_length -= n_used_query_length; in parse_pragma_w() 242 if (query_length >= 2 && query[0] == ':') { in parse_pragma_w() 252 query_length -= n_used_query_length; in parse_pragma_w() [all …]
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/dports/biology/ncbi-toolkit/ncbi/algo/blast/core/ |
H A D | blast_psi.c | 345 Uint4 query_length, in PSICreatePssmFromFrequencyRatios() argument 541 PSIMatrixNew(Uint4 query_length, Uint4 alphabet_size) in PSIMatrixNew() argument 549 retval->ncols = query_length; in PSIMatrixNew() 635 retval->query_length = query_length; in PSIDiagnosticsResponseNew() 640 calloc(query_length, sizeof(double)); in PSIDiagnosticsResponseNew() 657 _PSIAllocateMatrix(query_length, in PSIDiagnosticsResponseNew() 667 _PSIAllocateMatrix(query_length, in PSIDiagnosticsResponseNew() 677 calloc(query_length, sizeof(double)); in PSIDiagnosticsResponseNew() 728 diags->query_length); in PSIDiagnosticsResponseFree() 733 diags->query_length); in PSIDiagnosticsResponseFree() [all …]
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H A D | blast_psi_priv.c | 328 retval->dimensions->query_length = msa->dimensions->query_length; in _PSIMsaNew() 434 retval->ncols = query_length; in _PSIInternalPssmDataNew() 501 _PSIAlignedBlockNew(Uint4 query_length) in _PSIAlignedBlockNew() argument 524 for (i = 0; i < query_length; i++) { in _PSIAlignedBlockNew() 2303 Uint4 query_length, argument 2320 for (p = 0; p < query_length; p++) { 2344 Uint4 query_length, argument 2360 for (p = 0; p < query_length; p++) { 2498 Uint4 query_length = 0; local 2824 ASSERT(msa->dimensions->query_length == diagnostics->query_length); [all …]
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/core/ |
H A D | blast_psi.c | 345 Uint4 query_length, in PSICreatePssmFromFrequencyRatios() argument 541 PSIMatrixNew(Uint4 query_length, Uint4 alphabet_size) in PSIMatrixNew() argument 549 retval->ncols = query_length; in PSIMatrixNew() 635 retval->query_length = query_length; in PSIDiagnosticsResponseNew() 640 calloc(query_length, sizeof(double)); in PSIDiagnosticsResponseNew() 657 _PSIAllocateMatrix(query_length, in PSIDiagnosticsResponseNew() 667 _PSIAllocateMatrix(query_length, in PSIDiagnosticsResponseNew() 677 calloc(query_length, sizeof(double)); in PSIDiagnosticsResponseNew() 728 diags->query_length); in PSIDiagnosticsResponseFree() 733 diags->query_length); in PSIDiagnosticsResponseFree() [all …]
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H A D | blast_psi_priv.c | 328 retval->dimensions->query_length = msa->dimensions->query_length; in _PSIMsaNew() 434 retval->ncols = query_length; in _PSIInternalPssmDataNew() 501 _PSIAlignedBlockNew(Uint4 query_length) in _PSIAlignedBlockNew() argument 524 for (i = 0; i < query_length; i++) { in _PSIAlignedBlockNew() 2303 Uint4 query_length, argument 2320 for (p = 0; p < query_length; p++) { 2344 Uint4 query_length, argument 2360 for (p = 0; p < query_length; p++) { 2498 Uint4 query_length = 0; local 2824 ASSERT(msa->dimensions->query_length == diagnostics->query_length); [all …]
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/core/ |
H A D | blast_psi.c | 345 Uint4 query_length, in PSICreatePssmFromFrequencyRatios() argument 541 PSIMatrixNew(Uint4 query_length, Uint4 alphabet_size) in PSIMatrixNew() argument 549 retval->ncols = query_length; in PSIMatrixNew() 635 retval->query_length = query_length; in PSIDiagnosticsResponseNew() 640 calloc(query_length, sizeof(double)); in PSIDiagnosticsResponseNew() 657 _PSIAllocateMatrix(query_length, in PSIDiagnosticsResponseNew() 667 _PSIAllocateMatrix(query_length, in PSIDiagnosticsResponseNew() 677 calloc(query_length, sizeof(double)); in PSIDiagnosticsResponseNew() 728 diags->query_length); in PSIDiagnosticsResponseFree() 733 diags->query_length); in PSIDiagnosticsResponseFree() [all …]
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H A D | blast_psi_priv.c | 328 retval->dimensions->query_length = msa->dimensions->query_length; in _PSIMsaNew() 434 retval->ncols = query_length; in _PSIInternalPssmDataNew() 501 _PSIAlignedBlockNew(Uint4 query_length) in _PSIAlignedBlockNew() argument 524 for (i = 0; i < query_length; i++) { in _PSIAlignedBlockNew() 2303 Uint4 query_length, argument 2320 for (p = 0; p < query_length; p++) { 2344 Uint4 query_length, argument 2360 for (p = 0; p < query_length; p++) { 2498 Uint4 query_length = 0; local 2824 ASSERT(msa->dimensions->query_length == diagnostics->query_length); [all …]
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/dports/ftp/wzdftpd/wzdftpd-0.8.3/backends/pgsql/ |
H A D | libpgsql_user.c | 60 if (strlen(query) + strlen(mod) +2 >= *query_length) { in _append_safely_mod() 61 *query_length = strlen(query) + strlen(mod) + 256; in _append_safely_mod() 62 query = realloc(query, *query_length); in _append_safely_mod() 64 if (modified) strlcat(query, ",", *query_length); in _append_safely_mod() 65 strlcat(query, mod, *query_length); in _append_safely_mod() 73 query = _append_safely_mod(query, &(query_length), mod, modified); \ 82 unsigned int query_length = 512; in wpgsql_mod_user() local 114 query = malloc(query_length); in wpgsql_mod_user() 116 snprintf(query, query_length, "UPDATE users SET "); in wpgsql_mod_user() 196 query = _append_safely_mod(query, &query_length, mod, 0); in wpgsql_mod_user() [all …]
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H A D | libpgsql_group.c | 55 #define APPEND_STRING_TO_QUERY(format, s, query, query_length, mod, modified) \ argument 58 query = _append_safely_mod(query, &(query_length), mod, modified); \ 66 unsigned int query_length = 512; in wpgsql_mod_group() local 97 query = malloc(query_length); in wpgsql_mod_group() 99 snprintf(query, query_length, "UPDATE groups SET "); in wpgsql_mod_group() 103 … APPEND_STRING_TO_QUERY("groupname='%s' ", group->groupname, query, query_length, mod, modified); in wpgsql_mod_group() 114 APPEND_STRING_TO_QUERY("tagline='%s' ", group->tagline, query, query_length, mod, modified); in wpgsql_mod_group() 117 APPEND_STRING_TO_QUERY("gid='%u' ", group->gid, query, query_length, mod, modified); in wpgsql_mod_group() 136 APPEND_STRING_TO_QUERY("ratio='%u' ", group->ratio, query, query_length, mod, modified); in wpgsql_mod_group() 142 query = _append_safely_mod(query, &query_length, mod, 0); in wpgsql_mod_group() [all …]
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/dports/www/chromium-legacy/chromium-88.0.4324.182/ash/public/cpp/app_list/ |
H A D | app_list_metrics.cc | 105 void RecordLauncherIssuedSearchQueryLength(int query_length) { in RecordLauncherIssuedSearchQueryLength() argument 106 if (query_length > 0) { in RecordLauncherIssuedSearchQueryLength() 109 std::min(query_length, kMaxLoggedUserQueryLength), in RecordLauncherIssuedSearchQueryLength() 114 void RecordLauncherClickedSearchQueryLength(int query_length) { in RecordLauncherClickedSearchQueryLength() argument 115 if (query_length > 0) { in RecordLauncherClickedSearchQueryLength() 118 std::min(query_length, kMaxLoggedUserQueryLength), in RecordLauncherClickedSearchQueryLength() 124 int query_length) { in RecordSuccessfulAppLaunchUsingSearch() argument 125 if (query_length > 0) { in RecordSuccessfulAppLaunchUsingSearch() 127 UMA_HISTOGRAM_COUNTS_100(kSearchQueryLengthAppLaunch, query_length); in RecordSuccessfulAppLaunchUsingSearch()
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/dports/biology/exonerate/exonerate-2.4.0/src/c4/ |
H A D | region.c | 23 g_assert(region->query_length >= 0); in Region_is_valid() 35 gint query_length, gint target_length){ in Region_create() argument 40 region->query_length = query_length; in Region_create() 65 region->query_length, region->target_length); in Region_copy() 75 gint query_length, gint target_length){ in Region_init_static() argument 79 region->query_length = query_length; in Region_init_static() 117 region->query_length, in Region_print() 125 region->query_length, region->target_length, in Region_print()
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H A D | layout.c | 29 if(query_pos > query_length) in Layout_model_has_state_active() 65 if((query_pos != query_length) in Layout_model_has_state_active() 70 if(query_pos != query_length) in Layout_model_has_state_active() 78 if((query_pos != query_length) in Layout_model_has_state_active() 105 query_length, target_length)) in Layout_model_state_is_valid_input() 111 query_length, target_length)) in Layout_model_state_is_valid_input() 130 query_length, target_length)){ in Layout_transition_is_valid() 136 query_length, target_length)){ in Layout_transition_is_valid() 149 query_length, target_length)){ in Layout_transition_is_valid() 170 if(dst_query_pos == query_length){ in Layout_is_transition_valid() [all …]
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/dports/ftp/wzdftpd/wzdftpd-0.8.3/backends/mysql/ |
H A D | libmysql_user.c | 62 if (strlen(query) + strlen(mod) +2 >= *query_length) { in _append_safely_mod() 63 *query_length = strlen(query) + strlen(mod) + 256; in _append_safely_mod() 64 query = realloc(query, *query_length); in _append_safely_mod() 66 if (modified) strlcat(query, ",", *query_length); in _append_safely_mod() 67 strlcat(query, mod, *query_length); in _append_safely_mod() 72 #define APPEND_STRING_TO_QUERY(format, s, query, query_length, mod, modified) \ argument 75 query = _append_safely_mod(query, &(query_length), mod, modified); \ 85 unsigned int query_length = 512; in wmysql_mod_user() local 117 query = malloc(query_length); in wmysql_mod_user() 119 snprintf(query, query_length, "UPDATE users SET "); in wmysql_mod_user() [all …]
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H A D | libmysql_group.c | 57 #define APPEND_STRING_TO_QUERY(format, s, query, query_length, mod, modified) \ argument 60 query = _append_safely_mod(query, &(query_length), mod, modified); \ 69 unsigned int query_length = 512; in wmysql_mod_group() local 100 query = malloc(query_length); in wmysql_mod_group() 102 snprintf(query, query_length, "UPDATE groups SET "); in wmysql_mod_group() 106 … APPEND_STRING_TO_QUERY("groupname='%s' ", group->groupname, query, query_length, mod, modified); in wmysql_mod_group() 117 APPEND_STRING_TO_QUERY("tagline='%s' ", group->tagline, query, query_length, mod, modified); in wmysql_mod_group() 120 APPEND_STRING_TO_QUERY("gid='%u' ", group->gid, query, query_length, mod, modified); in wmysql_mod_group() 131 … APPEND_STRING_TO_QUERY("num_logins='%u' ", group->num_logins, query, query_length, mod, modified); in wmysql_mod_group() 140 APPEND_STRING_TO_QUERY("ratio='%u' ", group->ratio, query, query_length, mod, modified); in wmysql_mod_group() [all …]
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/dports/databases/xapian-core/xapian-core-1.4.18/weight/ |
H A D | weight.cc | 38 Weight::init_(const Internal & stats, Xapian::termcount query_length) in init_() argument 40 LOGCALL_VOID(MATCH, "Weight::init_", stats | query_length); in init_() 53 query_length_ = query_length; in init_() 59 Weight::init_(const Internal & stats, Xapian::termcount query_length, in init_() argument 62 LOGCALL_VOID(MATCH, "Weight::init_", stats | query_length | term | wqf | factor); in init_() 79 query_length_ = query_length; in init_() 85 Weight::init_(const Internal & stats, Xapian::termcount query_length, in init_() argument 89 …LOGCALL_VOID(MATCH, "Weight::init_", stats | query_length | factor | termfreq | reltermfreq | coll… in init_() 111 query_length_ = query_length; in init_()
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/dports/databases/xapian-core12/xapian-core-1.2.25/weight/ |
H A D | weight.cc | 37 Weight::init_(const Internal & stats, Xapian::termcount query_length) in init_() argument 39 LOGCALL_VOID(MATCH, "Weight::init_", stats | query_length); in init_() 51 query_length_ = query_length; in init_() 57 Weight::init_(const Internal & stats, Xapian::termcount query_length, in init_() argument 60 LOGCALL_VOID(MATCH, "Weight::init_", stats | query_length | term | wqf | factor); in init_() 75 query_length_ = query_length; in init_() 81 Weight::init_(const Internal & stats, Xapian::termcount query_length, in init_() argument 85 LOGCALL_VOID(MATCH, "Weight::init_", stats | query_length | factor | termfreq | reltermfreq); in init_() 107 query_length_ = query_length; in init_()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/api/ |
H A D | msa_pssm_input.cpp | 74 unsigned int query_length /* = 0 */, in CPsiBlastInputClustalW() argument 81 _ASSERT(query_length); in CPsiBlastInputClustalW() 82 m_MsaDimensions.query_length = query_length; in CPsiBlastInputClustalW() 83 m_Query.reset(new Uint1[query_length]); in CPsiBlastInputClustalW() 96 _ASSERT(m_MsaDimensions.query_length); in CPsiBlastInputClustalW() 154 retval.Set().reserve(query_length); in s_GetQuerySequenceData() 292 m_MsaDimensions.query_length = kQueryLength; in x_ExtractQueryFromMsa() 307 _ASSERT(m_MsaDimensions.query_length); in x_ExtractQueryFromMsa() 361 while (i < m_Msa->dimensions->query_length && in x_ExtractAlignmentData() 369 while (i < m_Msa->dimensions->query_length) { in x_ExtractAlignmentData() [all …]
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/api/ |
H A D | msa_pssm_input.cpp | 74 unsigned int query_length /* = 0 */, in CPsiBlastInputClustalW() argument 81 _ASSERT(query_length); in CPsiBlastInputClustalW() 82 m_MsaDimensions.query_length = query_length; in CPsiBlastInputClustalW() 83 m_Query.reset(new Uint1[query_length]); in CPsiBlastInputClustalW() 96 _ASSERT(m_MsaDimensions.query_length); in CPsiBlastInputClustalW() 154 retval.Set().reserve(query_length); in s_GetQuerySequenceData() 292 m_MsaDimensions.query_length = kQueryLength; in x_ExtractQueryFromMsa() 307 _ASSERT(m_MsaDimensions.query_length); in x_ExtractQueryFromMsa() 361 while (i < m_Msa->dimensions->query_length && in x_ExtractAlignmentData() 369 while (i < m_Msa->dimensions->query_length) { in x_ExtractAlignmentData() [all …]
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/dports/biology/ncbi-toolkit/ncbi/algo/blast/api/ |
H A D | blast_input.c | 213 ASSERT(query_length > 0); in s_GetOldQueryFromCheckpoint() 236 s_ValidateOldQuery(const Uint1 query[], int query_length, in s_ValidateOldQuery() argument 243 if (query_length != old_query_length) { in s_ValidateOldQuery() 346 int query_length, in s_PosReadStdCheckpointFile() argument 359 chkpt_query = calloc(query_length, sizeof(Uint1)); in s_PosReadStdCheckpointFile() 372 status = s_ValidateOldQuery(query, query_length, in s_PosReadStdCheckpointFile() 433 int query_length, in s_PosReadAsnCheckpoint() argument 503 if (pssm->numColumns != query_length) { in s_PosReadAsnCheckpoint() 506 pssm->numColumns, query_length); in s_PosReadAsnCheckpoint() 544 for (i = 0; i < query_length; i++) { in s_PosReadAsnCheckpoint() [all …]
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