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/dports/biology/hhsuite/hh-suite-3.3.0/src/cs/
H A Dpssm.h41 int query_length = 0; in Read() local
45 assert(query_length > 0); in Read()
47 query.Resize(query_length); in Read()
48 profile.Resize(query_length); in Read()
50 for (int i = 0; i < query_length; ++i) { in Read()
57 for(int i = 0; i < query_length; ++i) { in Read()
64 assert_eq(1 + query_length + query_length * AA::kSize, count); in Read()
73 int query_length = query.length(); in Write() local
77 for(int i = 0; i < query_length; ++i) { in Write()
82 for(int i = 0; i < query_length; ++i) { in Write()
[all …]
/dports/databases/mariadb104-server/mariadb-10.4.24/storage/mroonga/lib/
H A Dmrn_query_parser.cpp58 query_length, in parse()
80 static_cast<int>(query_length), in parse()
113 size_t current_query_length = query_length; in parse_pragma()
126 *raw_query_length = query_length; in parse_pragma()
205 while (query_length >= 1) { in parse_pragma_w()
212 query_length -= n_used_query_length; in parse_pragma_w()
214 if (query_length == 0) { in parse_pragma_w()
235 query_length -= n_used_query_length; in parse_pragma_w()
242 if (query_length >= 2 && query[0] == ':') { in parse_pragma_w()
252 query_length -= n_used_query_length; in parse_pragma_w()
[all …]
/dports/databases/mariadb104-client/mariadb-10.4.24/storage/mroonga/lib/
H A Dmrn_query_parser.cpp58 query_length, in parse()
80 static_cast<int>(query_length), in parse()
113 size_t current_query_length = query_length; in parse_pragma()
126 *raw_query_length = query_length; in parse_pragma()
205 while (query_length >= 1) { in parse_pragma_w()
212 query_length -= n_used_query_length; in parse_pragma_w()
214 if (query_length == 0) { in parse_pragma_w()
235 query_length -= n_used_query_length; in parse_pragma_w()
242 if (query_length >= 2 && query[0] == ':') { in parse_pragma_w()
252 query_length -= n_used_query_length; in parse_pragma_w()
[all …]
/dports/databases/mariadb103-client/mariadb-10.3.34/storage/mroonga/lib/
H A Dmrn_query_parser.cpp58 query_length, in parse()
80 static_cast<int>(query_length), in parse()
113 size_t current_query_length = query_length; in parse_pragma()
126 *raw_query_length = query_length; in parse_pragma()
205 while (query_length >= 1) { in parse_pragma_w()
212 query_length -= n_used_query_length; in parse_pragma_w()
214 if (query_length == 0) { in parse_pragma_w()
235 query_length -= n_used_query_length; in parse_pragma_w()
242 if (query_length >= 2 && query[0] == ':') { in parse_pragma_w()
252 query_length -= n_used_query_length; in parse_pragma_w()
[all …]
/dports/databases/mariadb105-client/mariadb-10.5.15/storage/mroonga/lib/
H A Dmrn_query_parser.cpp58 query_length, in parse()
80 static_cast<int>(query_length), in parse()
113 size_t current_query_length = query_length; in parse_pragma()
126 *raw_query_length = query_length; in parse_pragma()
205 while (query_length >= 1) { in parse_pragma_w()
212 query_length -= n_used_query_length; in parse_pragma_w()
214 if (query_length == 0) { in parse_pragma_w()
235 query_length -= n_used_query_length; in parse_pragma_w()
242 if (query_length >= 2 && query[0] == ':') { in parse_pragma_w()
252 query_length -= n_used_query_length; in parse_pragma_w()
[all …]
/dports/databases/mariadb103-server/mariadb-10.3.34/storage/mroonga/lib/
H A Dmrn_query_parser.cpp58 query_length, in parse()
80 static_cast<int>(query_length), in parse()
113 size_t current_query_length = query_length; in parse_pragma()
126 *raw_query_length = query_length; in parse_pragma()
205 while (query_length >= 1) { in parse_pragma_w()
212 query_length -= n_used_query_length; in parse_pragma_w()
214 if (query_length == 0) { in parse_pragma_w()
235 query_length -= n_used_query_length; in parse_pragma_w()
242 if (query_length >= 2 && query[0] == ':') { in parse_pragma_w()
252 query_length -= n_used_query_length; in parse_pragma_w()
[all …]
/dports/databases/mariadb105-server/mariadb-10.5.15/storage/mroonga/lib/
H A Dmrn_query_parser.cpp58 query_length, in parse()
80 static_cast<int>(query_length), in parse()
113 size_t current_query_length = query_length; in parse_pragma()
126 *raw_query_length = query_length; in parse_pragma()
205 while (query_length >= 1) { in parse_pragma_w()
212 query_length -= n_used_query_length; in parse_pragma_w()
214 if (query_length == 0) { in parse_pragma_w()
235 query_length -= n_used_query_length; in parse_pragma_w()
242 if (query_length >= 2 && query[0] == ':') { in parse_pragma_w()
252 query_length -= n_used_query_length; in parse_pragma_w()
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/dports/biology/ncbi-toolkit/ncbi/algo/blast/core/
H A Dblast_psi.c345 Uint4 query_length, in PSICreatePssmFromFrequencyRatios() argument
541 PSIMatrixNew(Uint4 query_length, Uint4 alphabet_size) in PSIMatrixNew() argument
549 retval->ncols = query_length; in PSIMatrixNew()
635 retval->query_length = query_length; in PSIDiagnosticsResponseNew()
640 calloc(query_length, sizeof(double)); in PSIDiagnosticsResponseNew()
657 _PSIAllocateMatrix(query_length, in PSIDiagnosticsResponseNew()
667 _PSIAllocateMatrix(query_length, in PSIDiagnosticsResponseNew()
677 calloc(query_length, sizeof(double)); in PSIDiagnosticsResponseNew()
728 diags->query_length); in PSIDiagnosticsResponseFree()
733 diags->query_length); in PSIDiagnosticsResponseFree()
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H A Dblast_psi_priv.c328 retval->dimensions->query_length = msa->dimensions->query_length; in _PSIMsaNew()
434 retval->ncols = query_length; in _PSIInternalPssmDataNew()
501 _PSIAlignedBlockNew(Uint4 query_length) in _PSIAlignedBlockNew() argument
524 for (i = 0; i < query_length; i++) { in _PSIAlignedBlockNew()
2303 Uint4 query_length, argument
2320 for (p = 0; p < query_length; p++) {
2344 Uint4 query_length, argument
2360 for (p = 0; p < query_length; p++) {
2498 Uint4 query_length = 0; local
2824 ASSERT(msa->dimensions->query_length == diagnostics->query_length);
[all …]
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/core/
H A Dblast_psi.c345 Uint4 query_length, in PSICreatePssmFromFrequencyRatios() argument
541 PSIMatrixNew(Uint4 query_length, Uint4 alphabet_size) in PSIMatrixNew() argument
549 retval->ncols = query_length; in PSIMatrixNew()
635 retval->query_length = query_length; in PSIDiagnosticsResponseNew()
640 calloc(query_length, sizeof(double)); in PSIDiagnosticsResponseNew()
657 _PSIAllocateMatrix(query_length, in PSIDiagnosticsResponseNew()
667 _PSIAllocateMatrix(query_length, in PSIDiagnosticsResponseNew()
677 calloc(query_length, sizeof(double)); in PSIDiagnosticsResponseNew()
728 diags->query_length); in PSIDiagnosticsResponseFree()
733 diags->query_length); in PSIDiagnosticsResponseFree()
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H A Dblast_psi_priv.c328 retval->dimensions->query_length = msa->dimensions->query_length; in _PSIMsaNew()
434 retval->ncols = query_length; in _PSIInternalPssmDataNew()
501 _PSIAlignedBlockNew(Uint4 query_length) in _PSIAlignedBlockNew() argument
524 for (i = 0; i < query_length; i++) { in _PSIAlignedBlockNew()
2303 Uint4 query_length, argument
2320 for (p = 0; p < query_length; p++) {
2344 Uint4 query_length, argument
2360 for (p = 0; p < query_length; p++) {
2498 Uint4 query_length = 0; local
2824 ASSERT(msa->dimensions->query_length == diagnostics->query_length);
[all …]
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/core/
H A Dblast_psi.c345 Uint4 query_length, in PSICreatePssmFromFrequencyRatios() argument
541 PSIMatrixNew(Uint4 query_length, Uint4 alphabet_size) in PSIMatrixNew() argument
549 retval->ncols = query_length; in PSIMatrixNew()
635 retval->query_length = query_length; in PSIDiagnosticsResponseNew()
640 calloc(query_length, sizeof(double)); in PSIDiagnosticsResponseNew()
657 _PSIAllocateMatrix(query_length, in PSIDiagnosticsResponseNew()
667 _PSIAllocateMatrix(query_length, in PSIDiagnosticsResponseNew()
677 calloc(query_length, sizeof(double)); in PSIDiagnosticsResponseNew()
728 diags->query_length); in PSIDiagnosticsResponseFree()
733 diags->query_length); in PSIDiagnosticsResponseFree()
[all …]
H A Dblast_psi_priv.c328 retval->dimensions->query_length = msa->dimensions->query_length; in _PSIMsaNew()
434 retval->ncols = query_length; in _PSIInternalPssmDataNew()
501 _PSIAlignedBlockNew(Uint4 query_length) in _PSIAlignedBlockNew() argument
524 for (i = 0; i < query_length; i++) { in _PSIAlignedBlockNew()
2303 Uint4 query_length, argument
2320 for (p = 0; p < query_length; p++) {
2344 Uint4 query_length, argument
2360 for (p = 0; p < query_length; p++) {
2498 Uint4 query_length = 0; local
2824 ASSERT(msa->dimensions->query_length == diagnostics->query_length);
[all …]
/dports/ftp/wzdftpd/wzdftpd-0.8.3/backends/pgsql/
H A Dlibpgsql_user.c60 if (strlen(query) + strlen(mod) +2 >= *query_length) { in _append_safely_mod()
61 *query_length = strlen(query) + strlen(mod) + 256; in _append_safely_mod()
62 query = realloc(query, *query_length); in _append_safely_mod()
64 if (modified) strlcat(query, ",", *query_length); in _append_safely_mod()
65 strlcat(query, mod, *query_length); in _append_safely_mod()
73 query = _append_safely_mod(query, &(query_length), mod, modified); \
82 unsigned int query_length = 512; in wpgsql_mod_user() local
114 query = malloc(query_length); in wpgsql_mod_user()
116 snprintf(query, query_length, "UPDATE users SET "); in wpgsql_mod_user()
196 query = _append_safely_mod(query, &query_length, mod, 0); in wpgsql_mod_user()
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H A Dlibpgsql_group.c55 #define APPEND_STRING_TO_QUERY(format, s, query, query_length, mod, modified) \ argument
58 query = _append_safely_mod(query, &(query_length), mod, modified); \
66 unsigned int query_length = 512; in wpgsql_mod_group() local
97 query = malloc(query_length); in wpgsql_mod_group()
99 snprintf(query, query_length, "UPDATE groups SET "); in wpgsql_mod_group()
103 … APPEND_STRING_TO_QUERY("groupname='%s' ", group->groupname, query, query_length, mod, modified); in wpgsql_mod_group()
114 APPEND_STRING_TO_QUERY("tagline='%s' ", group->tagline, query, query_length, mod, modified); in wpgsql_mod_group()
117 APPEND_STRING_TO_QUERY("gid='%u' ", group->gid, query, query_length, mod, modified); in wpgsql_mod_group()
136 APPEND_STRING_TO_QUERY("ratio='%u' ", group->ratio, query, query_length, mod, modified); in wpgsql_mod_group()
142 query = _append_safely_mod(query, &query_length, mod, 0); in wpgsql_mod_group()
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/dports/www/chromium-legacy/chromium-88.0.4324.182/ash/public/cpp/app_list/
H A Dapp_list_metrics.cc105 void RecordLauncherIssuedSearchQueryLength(int query_length) { in RecordLauncherIssuedSearchQueryLength() argument
106 if (query_length > 0) { in RecordLauncherIssuedSearchQueryLength()
109 std::min(query_length, kMaxLoggedUserQueryLength), in RecordLauncherIssuedSearchQueryLength()
114 void RecordLauncherClickedSearchQueryLength(int query_length) { in RecordLauncherClickedSearchQueryLength() argument
115 if (query_length > 0) { in RecordLauncherClickedSearchQueryLength()
118 std::min(query_length, kMaxLoggedUserQueryLength), in RecordLauncherClickedSearchQueryLength()
124 int query_length) { in RecordSuccessfulAppLaunchUsingSearch() argument
125 if (query_length > 0) { in RecordSuccessfulAppLaunchUsingSearch()
127 UMA_HISTOGRAM_COUNTS_100(kSearchQueryLengthAppLaunch, query_length); in RecordSuccessfulAppLaunchUsingSearch()
/dports/biology/exonerate/exonerate-2.4.0/src/c4/
H A Dregion.c23 g_assert(region->query_length >= 0); in Region_is_valid()
35 gint query_length, gint target_length){ in Region_create() argument
40 region->query_length = query_length; in Region_create()
65 region->query_length, region->target_length); in Region_copy()
75 gint query_length, gint target_length){ in Region_init_static() argument
79 region->query_length = query_length; in Region_init_static()
117 region->query_length, in Region_print()
125 region->query_length, region->target_length, in Region_print()
H A Dlayout.c29 if(query_pos > query_length) in Layout_model_has_state_active()
65 if((query_pos != query_length) in Layout_model_has_state_active()
70 if(query_pos != query_length) in Layout_model_has_state_active()
78 if((query_pos != query_length) in Layout_model_has_state_active()
105 query_length, target_length)) in Layout_model_state_is_valid_input()
111 query_length, target_length)) in Layout_model_state_is_valid_input()
130 query_length, target_length)){ in Layout_transition_is_valid()
136 query_length, target_length)){ in Layout_transition_is_valid()
149 query_length, target_length)){ in Layout_transition_is_valid()
170 if(dst_query_pos == query_length){ in Layout_is_transition_valid()
[all …]
/dports/ftp/wzdftpd/wzdftpd-0.8.3/backends/mysql/
H A Dlibmysql_user.c62 if (strlen(query) + strlen(mod) +2 >= *query_length) { in _append_safely_mod()
63 *query_length = strlen(query) + strlen(mod) + 256; in _append_safely_mod()
64 query = realloc(query, *query_length); in _append_safely_mod()
66 if (modified) strlcat(query, ",", *query_length); in _append_safely_mod()
67 strlcat(query, mod, *query_length); in _append_safely_mod()
72 #define APPEND_STRING_TO_QUERY(format, s, query, query_length, mod, modified) \ argument
75 query = _append_safely_mod(query, &(query_length), mod, modified); \
85 unsigned int query_length = 512; in wmysql_mod_user() local
117 query = malloc(query_length); in wmysql_mod_user()
119 snprintf(query, query_length, "UPDATE users SET "); in wmysql_mod_user()
[all …]
H A Dlibmysql_group.c57 #define APPEND_STRING_TO_QUERY(format, s, query, query_length, mod, modified) \ argument
60 query = _append_safely_mod(query, &(query_length), mod, modified); \
69 unsigned int query_length = 512; in wmysql_mod_group() local
100 query = malloc(query_length); in wmysql_mod_group()
102 snprintf(query, query_length, "UPDATE groups SET "); in wmysql_mod_group()
106 … APPEND_STRING_TO_QUERY("groupname='%s' ", group->groupname, query, query_length, mod, modified); in wmysql_mod_group()
117 APPEND_STRING_TO_QUERY("tagline='%s' ", group->tagline, query, query_length, mod, modified); in wmysql_mod_group()
120 APPEND_STRING_TO_QUERY("gid='%u' ", group->gid, query, query_length, mod, modified); in wmysql_mod_group()
131 … APPEND_STRING_TO_QUERY("num_logins='%u' ", group->num_logins, query, query_length, mod, modified); in wmysql_mod_group()
140 APPEND_STRING_TO_QUERY("ratio='%u' ", group->ratio, query, query_length, mod, modified); in wmysql_mod_group()
[all …]
/dports/databases/xapian-core/xapian-core-1.4.18/weight/
H A Dweight.cc38 Weight::init_(const Internal & stats, Xapian::termcount query_length) in init_() argument
40 LOGCALL_VOID(MATCH, "Weight::init_", stats | query_length); in init_()
53 query_length_ = query_length; in init_()
59 Weight::init_(const Internal & stats, Xapian::termcount query_length, in init_() argument
62 LOGCALL_VOID(MATCH, "Weight::init_", stats | query_length | term | wqf | factor); in init_()
79 query_length_ = query_length; in init_()
85 Weight::init_(const Internal & stats, Xapian::termcount query_length, in init_() argument
89 …LOGCALL_VOID(MATCH, "Weight::init_", stats | query_length | factor | termfreq | reltermfreq | coll… in init_()
111 query_length_ = query_length; in init_()
/dports/databases/xapian-core12/xapian-core-1.2.25/weight/
H A Dweight.cc37 Weight::init_(const Internal & stats, Xapian::termcount query_length) in init_() argument
39 LOGCALL_VOID(MATCH, "Weight::init_", stats | query_length); in init_()
51 query_length_ = query_length; in init_()
57 Weight::init_(const Internal & stats, Xapian::termcount query_length, in init_() argument
60 LOGCALL_VOID(MATCH, "Weight::init_", stats | query_length | term | wqf | factor); in init_()
75 query_length_ = query_length; in init_()
81 Weight::init_(const Internal & stats, Xapian::termcount query_length, in init_() argument
85 LOGCALL_VOID(MATCH, "Weight::init_", stats | query_length | factor | termfreq | reltermfreq); in init_()
107 query_length_ = query_length; in init_()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/api/
H A Dmsa_pssm_input.cpp74 unsigned int query_length /* = 0 */, in CPsiBlastInputClustalW() argument
81 _ASSERT(query_length); in CPsiBlastInputClustalW()
82 m_MsaDimensions.query_length = query_length; in CPsiBlastInputClustalW()
83 m_Query.reset(new Uint1[query_length]); in CPsiBlastInputClustalW()
96 _ASSERT(m_MsaDimensions.query_length); in CPsiBlastInputClustalW()
154 retval.Set().reserve(query_length); in s_GetQuerySequenceData()
292 m_MsaDimensions.query_length = kQueryLength; in x_ExtractQueryFromMsa()
307 _ASSERT(m_MsaDimensions.query_length); in x_ExtractQueryFromMsa()
361 while (i < m_Msa->dimensions->query_length && in x_ExtractAlignmentData()
369 while (i < m_Msa->dimensions->query_length) { in x_ExtractAlignmentData()
[all …]
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/api/
H A Dmsa_pssm_input.cpp74 unsigned int query_length /* = 0 */, in CPsiBlastInputClustalW() argument
81 _ASSERT(query_length); in CPsiBlastInputClustalW()
82 m_MsaDimensions.query_length = query_length; in CPsiBlastInputClustalW()
83 m_Query.reset(new Uint1[query_length]); in CPsiBlastInputClustalW()
96 _ASSERT(m_MsaDimensions.query_length); in CPsiBlastInputClustalW()
154 retval.Set().reserve(query_length); in s_GetQuerySequenceData()
292 m_MsaDimensions.query_length = kQueryLength; in x_ExtractQueryFromMsa()
307 _ASSERT(m_MsaDimensions.query_length); in x_ExtractQueryFromMsa()
361 while (i < m_Msa->dimensions->query_length && in x_ExtractAlignmentData()
369 while (i < m_Msa->dimensions->query_length) { in x_ExtractAlignmentData()
[all …]
/dports/biology/ncbi-toolkit/ncbi/algo/blast/api/
H A Dblast_input.c213 ASSERT(query_length > 0); in s_GetOldQueryFromCheckpoint()
236 s_ValidateOldQuery(const Uint1 query[], int query_length, in s_ValidateOldQuery() argument
243 if (query_length != old_query_length) { in s_ValidateOldQuery()
346 int query_length, in s_PosReadStdCheckpointFile() argument
359 chkpt_query = calloc(query_length, sizeof(Uint1)); in s_PosReadStdCheckpointFile()
372 status = s_ValidateOldQuery(query, query_length, in s_PosReadStdCheckpointFile()
433 int query_length, in s_PosReadAsnCheckpoint() argument
503 if (pssm->numColumns != query_length) { in s_PosReadAsnCheckpoint()
506 pssm->numColumns, query_length); in s_PosReadAsnCheckpoint()
544 for (i = 0; i < query_length; i++) { in s_PosReadAsnCheckpoint()
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