Searched refs:queryseq_offset (Results 1 – 5 of 5) sorted by relevance
/dports/biology/gmap/gmap-2020-09-12/src/ |
H A D | substring.h | 375 int hardclip_low, int hardclip_high, int queryseq_offset); 380 int hardclip_low, int hardclip_high, int queryseq_offset); 384 int hardclip_low, int hardclip_high, int queryseq_offset); 387 int hardclip_low, int hardclip_high, int queryseq_offset);
|
H A D | substring.c | 5205 int hardclip_low, int hardclip_high, int queryseq_offset) { in Substring_convert_to_pairs_out() argument 5218 querylength,hardclip_low,hardclip_high,queryseq_offset)); in Substring_convert_to_pairs_out() 5248 for (i = querystart, querypos = queryseq_offset + querystart; i < queryend; i++, querypos++) { in Substring_convert_to_pairs_out() 5253 for (i = querystart, querypos = queryseq_offset + querystart; i < queryend; i++, querypos++) { in Substring_convert_to_pairs_out() 5347 int hardclip_low, int hardclip_high, int queryseq_offset) { in Substring_add_insertion_out() argument 5420 querypos = queryendA + queryseq_offset; in Substring_add_insertion_out() 5435 int hardclip_low, int hardclip_high, int queryseq_offset) { in Substring_add_deletion_out() argument 5472 querypos = queryendA + queryseq_offset; in Substring_add_deletion_out() 5512 querypos = queryendA + queryseq_offset; in Substring_add_deletion_out() 5527 int hardclip_low, int hardclip_high, int queryseq_offset) { in Substring_add_intron_out() argument [all …]
|
H A D | stage3hr.c | 10431 int hardclip_low, int hardclip_high, int queryseq_offset) { in Stage3end_convert_to_pairs_out() argument 10448 queryseq,hardclip_low,hardclip_high,queryseq_offset); in Stage3end_convert_to_pairs_out() 10457 hardclip_low,hardclip_high,queryseq_offset); in Stage3end_convert_to_pairs_out() 10462 hardclip_low,hardclip_high,queryseq_offset); in Stage3end_convert_to_pairs_out() 10465 hardclip_low,hardclip_high,queryseq_offset); in Stage3end_convert_to_pairs_out() 10472 queryseq,hardclip_low,hardclip_high,queryseq_offset); in Stage3end_convert_to_pairs_out()
|
H A D | pair.c | 2033 int hardclip_low, int hardclip_high, int queryseq_offset) { 2049 …pairs = List_push_out(pairs,(void *) Pair_new_out(pair->querypos + queryseq_offset,/*genomepos*/pa…
|
H A D | stage3.c | 5173 add_queryseq_offset (List_T path, int queryseq_offset in add_queryseq_offset() argument 5189 pair->querypos += queryseq_offset; in add_queryseq_offset()
|