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Searched refs:queryseq_offset (Results 1 – 5 of 5) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A Dsubstring.h375 int hardclip_low, int hardclip_high, int queryseq_offset);
380 int hardclip_low, int hardclip_high, int queryseq_offset);
384 int hardclip_low, int hardclip_high, int queryseq_offset);
387 int hardclip_low, int hardclip_high, int queryseq_offset);
H A Dsubstring.c5205 int hardclip_low, int hardclip_high, int queryseq_offset) { in Substring_convert_to_pairs_out() argument
5218 querylength,hardclip_low,hardclip_high,queryseq_offset)); in Substring_convert_to_pairs_out()
5248 for (i = querystart, querypos = queryseq_offset + querystart; i < queryend; i++, querypos++) { in Substring_convert_to_pairs_out()
5253 for (i = querystart, querypos = queryseq_offset + querystart; i < queryend; i++, querypos++) { in Substring_convert_to_pairs_out()
5347 int hardclip_low, int hardclip_high, int queryseq_offset) { in Substring_add_insertion_out() argument
5420 querypos = queryendA + queryseq_offset; in Substring_add_insertion_out()
5435 int hardclip_low, int hardclip_high, int queryseq_offset) { in Substring_add_deletion_out() argument
5472 querypos = queryendA + queryseq_offset; in Substring_add_deletion_out()
5512 querypos = queryendA + queryseq_offset; in Substring_add_deletion_out()
5527 int hardclip_low, int hardclip_high, int queryseq_offset) { in Substring_add_intron_out() argument
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H A Dstage3hr.c10431 int hardclip_low, int hardclip_high, int queryseq_offset) { in Stage3end_convert_to_pairs_out() argument
10448 queryseq,hardclip_low,hardclip_high,queryseq_offset); in Stage3end_convert_to_pairs_out()
10457 hardclip_low,hardclip_high,queryseq_offset); in Stage3end_convert_to_pairs_out()
10462 hardclip_low,hardclip_high,queryseq_offset); in Stage3end_convert_to_pairs_out()
10465 hardclip_low,hardclip_high,queryseq_offset); in Stage3end_convert_to_pairs_out()
10472 queryseq,hardclip_low,hardclip_high,queryseq_offset); in Stage3end_convert_to_pairs_out()
H A Dpair.c2033 int hardclip_low, int hardclip_high, int queryseq_offset) {
2049 …pairs = List_push_out(pairs,(void *) Pair_new_out(pair->querypos + queryseq_offset,/*genomepos*/pa…
H A Dstage3.c5173 add_queryseq_offset (List_T path, int queryseq_offset in add_queryseq_offset() argument
5189 pair->querypos += queryseq_offset; in add_queryseq_offset()