| /dports/biology/stacks/stacks-2.4/src/ |
| H A D | locus.cc | 371 reads_.clear(); in clear()
377 for (auto& r : reads_) in n_samples()
423 for (SAlnRead& r : reads_) { in hard_clip_right_Ns()
434 sort(this->reads_.begin(), this->reads_.end(), in sort_by_read_name()
462 sort(this->reads_.begin(), this->reads_.end(), in sort_by_alignment_offset()
483 for (auto r1 = this->reads_.begin(); r1 != this->reads_.end(); ++r1) { in merge_paired_reads()
515 reads_.erase(std::remove_if(reads_.begin(), in merge_paired_reads()
519 reads_.end()); in merge_paired_reads()
529 for (auto& r : loc.reads_) in operator <<()
540 for (SAlnRead& r : reads_) { in remove_unmerged_reads()
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| H A D | locus.h | 201 vector<SRead> reads_; // Forward reads. Order is arbitrary. variable
206 : mpopi_(&mpopi), bam_i_(SIZE_MAX), id_(-1), aln_pos_(), reads_(), pe_reads_() in CLocReadSet()
213 const vector<SRead>& reads() const {return reads_;} in reads()
214 vector<SRead>& reads() {return reads_;} in reads()
218 void clear() {bam_i_=SIZE_MAX; id_=-1; reads_.clear(); pe_reads_.clear();} in clear()
222 void add(SRead&& r) {reads_.push_back(move(r));} in add()
232 vector<SAlnRead> reads_; variable
246 const vector<SAlnRead>& reads() const {return reads_;} in reads()
313 reads_per_sample_.at(r.sample).push_back(reads_.size()); in add()
314 reads_.push_back(move(r)); in add()
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| /dports/biology/bowtie2/bowtie2-2.4.4/ |
| H A D | aligner_metrics.h | 103 reads_(0), in AlignerMetrics()
139 cout << " # Reads: " << reads_ << endl; in printSummary()
140 float hopct = (reads_ > 0) ? (((float)homoReads_)/((float)reads_)) : (0.0f); in printSummary()
143 float lopct = (reads_ > 0) ? ((float)lowEntReads_/(float)(reads_)) : (0.0f); in printSummary()
146 float unpct = (reads_ > 0) ? ((float)unalignedReads_/(float)(reads_)) : (0.0f); in printSummary()
149 float npct = (reads_ > 0) ? ((float)threeOrMoreNReads_/(float)(reads_)) : (0.0f); in printSummary()
225 reads_++; in finishRead()
290 uint32_t reads_; variable
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| /dports/biology/hisat2/hisat2-2.2.1/ |
| H A D | aligner_metrics.h | 103 reads_(0), in AlignerMetrics()
139 cout << " # Reads: " << reads_ << endl; in printSummary()
140 float hopct = (reads_ > 0) ? (((float)homoReads_)/((float)reads_)) : (0.0f); in printSummary()
143 float lopct = (reads_ > 0) ? ((float)lowEntReads_/(float)(reads_)) : (0.0f); in printSummary()
146 float unpct = (reads_ > 0) ? ((float)unalignedReads_/(float)(reads_)) : (0.0f); in printSummary()
149 float npct = (reads_ > 0) ? ((float)threeOrMoreNReads_/(float)(reads_)) : (0.0f); in printSummary()
225 reads_++; in finishRead()
290 uint32_t reads_; variable
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| /dports/biology/bowtie/bowtie-1.3.1/ |
| H A D | aligner_metrics.h | 88 reads_(0), in AlignerMetrics()
124 cout << " # Reads: " << reads_ << endl; in printSummary()
125 float hopct = (reads_ > 0) ? (((float)homoReads_)/((float)reads_)) : (0.0); in printSummary()
128 float lopct = (reads_ > 0) ? ((float)lowEntReads_/(float)(reads_)) : (0.0); in printSummary()
131 float unpct = (reads_ > 0) ? ((float)unalignedReads_/(float)(reads_)) : (0.0); in printSummary()
134 float npct = (reads_ > 0) ? ((float)threeOrMoreNReads_/(float)(reads_)) : (0.0); in printSummary()
248 reads_++; in finishRead()
313 uint32_t reads_; variable
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| /dports/cad/cascade-compiler/cascade-f4f7ae8bd1dd379790c0e58c286df90b8d1cdcde/src/cascade/verilog/analyze/ |
| H A D | read_set.cc | 48 return reads_.begin(); in begin()
52 return reads_.end(); in end()
57 reads_.insert(fe); in visit()
68 reads_.insert(id); in visit()
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| /dports/www/qt5-webengine/qtwebengine-everywhere-src-5.15.2/src/3rdparty/chromium/services/audio/ |
| H A D | input_sync_writer_unittest.cc | 47 reads_(0), in MockCancelableSyncSocket()
65 if (receives_ == reads_) in Receive()
70 for (; received < length / sizeof(uint32_t) && receives_ < reads_; in Receive()
73 EXPECT_LE(receives_, reads_); in Receive()
79 size_t Peek() override { return (reads_ - receives_) * sizeof(uint32_t); } in Peek()
83 reads_ += buffers; in Read()
84 EXPECT_LE(reads_, writes_); in Read()
92 int NumberOfBuffersFilled() { return writes_ - reads_; } in NumberOfBuffersFilled()
97 int reads_; member in audio::MockCancelableSyncSocket
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| /dports/www/chromium-legacy/chromium-88.0.4324.182/services/audio/ |
| H A D | input_sync_writer_unittest.cc | 47 reads_(0), in MockCancelableSyncSocket()
65 if (receives_ == reads_) in Receive()
70 for (; received < length / sizeof(uint32_t) && receives_ < reads_; in Receive()
73 EXPECT_LE(receives_, reads_); in Receive()
79 size_t Peek() override { return (reads_ - receives_) * sizeof(uint32_t); } in Peek()
83 reads_ += buffers; in Read()
84 EXPECT_LE(reads_, writes_); in Read()
92 int NumberOfBuffersFilled() { return writes_ - reads_; } in NumberOfBuffersFilled()
97 int reads_; member in audio::MockCancelableSyncSocket
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| /dports/www/chromium-legacy/chromium-88.0.4324.182/chrome/browser/nearby_sharing/ |
| H A D | nearby_connection_impl.cc | 29 if (reads_.empty()) in Read()
32 std::vector<uint8_t> bytes = std::move(reads_.front()); in Read()
33 reads_.pop(); in Read()
69 reads_.push(std::move(bytes)); in WriteMessage()
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| /dports/net/kea/kea-2.0.1/src/lib/dhcpsrv/ |
| H A D | lease_file_stats.h | 33 return (reads_); in getReads()
63 reads_ = 0; in clearStatistics()
73 uint32_t reads_;
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| /dports/net-p2p/bitcoin/bitcoin-22.0/src/leveldb/benchmarks/ |
| H A D | db_bench_tree_db.cc | 135 int reads_; member in leveldb::Benchmark
291 reads_(FLAGS_reads < 0 ? FLAGS_num : FLAGS_reads), in Benchmark()
364 int n = reads_; in Run()
365 reads_ /= 1000; in Run()
367 reads_ = n; in Run()
369 int n = reads_; in Run()
370 reads_ /= 1000; in Run()
372 reads_ = n; in Run()
466 for (int i = 0; i < reads_; i++) { in ReadRandom()
468 const int k = rand_.Next() % reads_; in ReadRandom()
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| /dports/net-p2p/bitcoin-daemon/bitcoin-22.0/src/leveldb/benchmarks/ |
| H A D | db_bench_tree_db.cc | 135 int reads_; member in leveldb::Benchmark
291 reads_(FLAGS_reads < 0 ? FLAGS_num : FLAGS_reads), in Benchmark()
364 int n = reads_; in Run()
365 reads_ /= 1000; in Run()
367 reads_ = n; in Run()
369 int n = reads_; in Run()
370 reads_ /= 1000; in Run()
372 reads_ = n; in Run()
466 for (int i = 0; i < reads_; i++) { in ReadRandom()
468 const int k = rand_.Next() % reads_; in ReadRandom()
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| /dports/net-p2p/bitcoin-utils/bitcoin-22.0/src/leveldb/benchmarks/ |
| H A D | db_bench_tree_db.cc | 135 int reads_; member in leveldb::Benchmark
291 reads_(FLAGS_reads < 0 ? FLAGS_num : FLAGS_reads), in Benchmark()
364 int n = reads_; in Run()
365 reads_ /= 1000; in Run()
367 reads_ = n; in Run()
369 int n = reads_; in Run()
370 reads_ /= 1000; in Run()
372 reads_ = n; in Run()
466 for (int i = 0; i < reads_; i++) { in ReadRandom()
468 const int k = rand_.Next() % reads_; in ReadRandom()
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| /dports/sysutils/vector/vector-0.10.0/cargo-crates/leveldb-sys-2.0.5/deps/leveldb-1.18/doc/bench/ |
| H A D | db_bench_tree_db.cc | 137 int reads_; member in leveldb::Benchmark
294 reads_(FLAGS_reads < 0 ? FLAGS_num : FLAGS_reads), in Benchmark()
367 int n = reads_; in Run()
368 reads_ /= 1000; in Run()
370 reads_ = n; in Run()
372 int n = reads_; in Run()
373 reads_ /= 1000; in Run()
375 reads_ = n; in Run()
472 for (int i = 0; i < reads_; i++) { in ReadRandom()
474 const int k = rand_.Next() % reads_; in ReadRandom()
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| /dports/net-p2p/litecoin-daemon/litecoin-0.18.1/src/leveldb/doc/bench/ |
| H A D | db_bench_tree_db.cc | 137 int reads_; member in leveldb::Benchmark
294 reads_(FLAGS_reads < 0 ? FLAGS_num : FLAGS_reads), in Benchmark()
367 int n = reads_; in Run()
368 reads_ /= 1000; in Run()
370 reads_ = n; in Run()
372 int n = reads_; in Run()
373 reads_ /= 1000; in Run()
375 reads_ = n; in Run()
472 for (int i = 0; i < reads_; i++) { in ReadRandom()
474 const int k = rand_.Next() % reads_; in ReadRandom()
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| /dports/net-p2p/litecoin-utils/litecoin-0.18.1/src/leveldb/doc/bench/ |
| H A D | db_bench_tree_db.cc | 137 int reads_; member in leveldb::Benchmark
294 reads_(FLAGS_reads < 0 ? FLAGS_num : FLAGS_reads), in Benchmark()
367 int n = reads_; in Run()
368 reads_ /= 1000; in Run()
370 reads_ = n; in Run()
372 int n = reads_; in Run()
373 reads_ /= 1000; in Run()
375 reads_ = n; in Run()
472 for (int i = 0; i < reads_; i++) { in ReadRandom()
474 const int k = rand_.Next() % reads_; in ReadRandom()
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| /dports/net-p2p/zetacoin/zetacoin-0.13.2.1/src/leveldb/doc/bench/ |
| H A D | db_bench_tree_db.cc | 137 int reads_; member in leveldb::Benchmark
294 reads_(FLAGS_reads < 0 ? FLAGS_num : FLAGS_reads), in Benchmark()
367 int n = reads_; in Run()
368 reads_ /= 1000; in Run()
370 reads_ = n; in Run()
372 int n = reads_; in Run()
373 reads_ /= 1000; in Run()
375 reads_ = n; in Run()
472 for (int i = 0; i < reads_; i++) { in ReadRandom()
474 const int k = rand_.Next() % reads_; in ReadRandom()
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| /dports/net-p2p/namecoin-utils/namecoin-core-nc0.21.0.1/src/leveldb/benchmarks/ |
| H A D | db_bench_tree_db.cc | 135 int reads_; member in leveldb::Benchmark
291 reads_(FLAGS_reads < 0 ? FLAGS_num : FLAGS_reads), in Benchmark()
364 int n = reads_; in Run()
365 reads_ /= 1000; in Run()
367 reads_ = n; in Run()
369 int n = reads_; in Run()
370 reads_ /= 1000; in Run()
372 reads_ = n; in Run()
466 for (int i = 0; i < reads_; i++) { in ReadRandom()
468 const int k = rand_.Next() % reads_; in ReadRandom()
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| /dports/net-p2p/zetacoin-utils/zetacoin-0.13.2.1/src/leveldb/doc/bench/ |
| H A D | db_bench_tree_db.cc | 137 int reads_; member in leveldb::Benchmark
294 reads_(FLAGS_reads < 0 ? FLAGS_num : FLAGS_reads), in Benchmark()
367 int n = reads_; in Run()
368 reads_ /= 1000; in Run()
370 reads_ = n; in Run()
372 int n = reads_; in Run()
373 reads_ /= 1000; in Run()
375 reads_ = n; in Run()
472 for (int i = 0; i < reads_; i++) { in ReadRandom()
474 const int k = rand_.Next() % reads_; in ReadRandom()
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| /dports/net-p2p/qtum/qtum-mainnet-fastlane-v0.20.3/src/leveldb/benchmarks/ |
| H A D | db_bench_tree_db.cc | 135 int reads_; member in leveldb::Benchmark
291 reads_(FLAGS_reads < 0 ? FLAGS_num : FLAGS_reads), in Benchmark()
364 int n = reads_; in Run()
365 reads_ /= 1000; in Run()
367 reads_ = n; in Run()
369 int n = reads_; in Run()
370 reads_ /= 1000; in Run()
372 reads_ = n; in Run()
466 for (int i = 0; i < reads_; i++) { in ReadRandom()
468 const int k = rand_.Next() % reads_; in ReadRandom()
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| /dports/net-p2p/namecoin/namecoin-core-nc0.21.0.1/src/leveldb/benchmarks/ |
| H A D | db_bench_tree_db.cc | 135 int reads_; member in leveldb::Benchmark
291 reads_(FLAGS_reads < 0 ? FLAGS_num : FLAGS_reads), in Benchmark()
364 int n = reads_; in Run()
365 reads_ /= 1000; in Run()
367 reads_ = n; in Run()
369 int n = reads_; in Run()
370 reads_ /= 1000; in Run()
372 reads_ = n; in Run()
466 for (int i = 0; i < reads_; i++) { in ReadRandom()
468 const int k = rand_.Next() % reads_; in ReadRandom()
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| /dports/net-p2p/namecoin-daemon/namecoin-core-nc0.21.0.1/src/leveldb/benchmarks/ |
| H A D | db_bench_tree_db.cc | 135 int reads_; member in leveldb::Benchmark
291 reads_(FLAGS_reads < 0 ? FLAGS_num : FLAGS_reads), in Benchmark()
364 int n = reads_; in Run()
365 reads_ /= 1000; in Run()
367 reads_ = n; in Run()
369 int n = reads_; in Run()
370 reads_ /= 1000; in Run()
372 reads_ = n; in Run()
466 for (int i = 0; i < reads_; i++) { in ReadRandom()
468 const int k = rand_.Next() % reads_; in ReadRandom()
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| /dports/www/qt5-webengine/qtwebengine-everywhere-src-5.15.2/src/3rdparty/chromium/third_party/leveldatabase/src/benchmarks/ |
| H A D | db_bench_tree_db.cc | 135 int reads_; member in leveldb::Benchmark
291 reads_(FLAGS_reads < 0 ? FLAGS_num : FLAGS_reads), in Benchmark()
364 int n = reads_; in Run()
365 reads_ /= 1000; in Run()
367 reads_ = n; in Run()
369 int n = reads_; in Run()
370 reads_ /= 1000; in Run()
372 reads_ = n; in Run()
466 for (int i = 0; i < reads_; i++) { in ReadRandom()
468 const int k = rand_.Next() % reads_; in ReadRandom()
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| /dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/leveldatabase/src/benchmarks/ |
| H A D | db_bench_tree_db.cc | 136 int reads_; member in leveldb::Benchmark
299 reads_(FLAGS_reads < 0 ? FLAGS_num : FLAGS_reads), in Benchmark()
372 int n = reads_; in Run()
373 reads_ /= 1000; in Run()
375 reads_ = n; in Run()
377 int n = reads_; in Run()
378 reads_ /= 1000; in Run()
380 reads_ = n; in Run()
475 for (int i = 0; i < reads_; i++) { in ReadRandom()
477 const int k = rand_.Next() % reads_; in ReadRandom()
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| /dports/sysutils/vector/leveldb-sys-bbdd99a6fab0a7444a8c6eb0cc86a1a5a75f7fa1/deps/leveldb-1.22/doc/bench/ |
| H A D | db_bench_tree_db.cc | 135 int reads_; member in leveldb::Benchmark
291 reads_(FLAGS_reads < 0 ? FLAGS_num : FLAGS_reads), in Benchmark()
364 int n = reads_; in Run()
365 reads_ /= 1000; in Run()
367 reads_ = n; in Run()
369 int n = reads_; in Run()
370 reads_ /= 1000; in Run()
372 reads_ = n; in Run()
466 for (int i = 0; i < reads_; i++) { in ReadRandom()
468 const int k = rand_.Next() % reads_; in ReadRandom()
|