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Searched refs:remap_seqlength (Results 1 – 4 of 4) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A Dkmer-search.h23 Kmer_remap_transcriptome (char *remap_sequence, int remap_seqlength,
H A Dkmer-search.c4861 Kmer_remap_transcriptome (char *remap_sequence, int remap_seqlength, in Kmer_remap_transcriptome() argument
4908 remap_compress_fwd = Compress_new_fwd(remap_sequence,remap_seqlength); in Kmer_remap_transcriptome()
4917 tplus_diagterm_5 = remap_seqlength - querypos; in Kmer_remap_transcriptome()
4926 query_lastpos = remap_seqlength - index1part_tr; in Kmer_remap_transcriptome()
4932 tplus_diagterm_3 = remap_seqlength - querypos; in Kmer_remap_transcriptome()
4957 pos5,/*pos3*/remap_seqlength,/*plusp*/true,/*genestrand*/0); in Kmer_remap_transcriptome()
4963 /*high*/tr_left+remap_seqlength); in Kmer_remap_transcriptome()
4973 trend = trstart + remap_seqlength; in Kmer_remap_transcriptome()
5067 pos5,/*pos3*/remap_seqlength,/*plusp*/false,/*genestrand*/0); in Kmer_remap_transcriptome()
5073 /*high*/tr_left+remap_seqlength); in Kmer_remap_transcriptome()
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H A Dstage3hr.c5286 int remap_seqlength; in Stage3end_new_splice() local
5585 remap_sequence = Substring_genomic_sequence(&remap_seqlength,substring_other,genomecomp); in Stage3end_new_splice()
5586 if ((transcripts = Kmer_remap_transcriptome(remap_sequence,remap_seqlength,new->other_chrnum, in Stage3end_new_splice()
5622 int remap_seqlength; in Stage3end_new_distant() local
5877 remap_sequence = Substring_genomic_sequence(&remap_seqlength,substring_other,genomecomp); in Stage3end_new_distant()
5878 if ((transcripts = Kmer_remap_transcriptome(remap_sequence,remap_seqlength,new->other_chrnum, in Stage3end_new_distant()
11325 int remap_seqlength; in Stage3pair_new() local
11814 remap_sequence = Stage3end_substrings_genomic_sequence(&remap_seqlength,hit3,genomecomp); in Stage3pair_new()
11817 if ((transcripts = Kmer_remap_transcriptome(remap_sequence,remap_seqlength,hit3->chrnum, in Stage3pair_new()
11829 remap_sequence = Stage3end_substrings_genomic_sequence(&remap_seqlength,hit5,genomecomp); in Stage3pair_new()
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H A Dstage1hr.c1027 int remap_seqlength; in remap_to_transcriptome() local
1034 remap_sequence = Stage3end_substrings_genomic_sequence(&remap_seqlength,hit,genomecomp); in remap_to_transcriptome()
1035 if ((transcripts = Kmer_remap_transcriptome(remap_sequence,remap_seqlength, in remap_to_transcriptome()