Searched refs:samNoSQ (Results 1 – 4 of 4) sorted by relevance
| /dports/biology/bowtie/bowtie-1.3.1/ |
| H A D | ebwt_search.cpp | 137 static bool samNoSQ; // don't print @SQ header lines variable
240 samNoSQ = false; // don't print @SQ header lines in resetOptions()
789 case ARG_SAM_NOSQ: samNoSQ = true; break; in parseOptions()
3223 if(!samNoSQ) {
3229 refnames, samNoSQ,
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| /dports/biology/hisat2/hisat2-2.2.1/ |
| H A D | hisat_bp.cpp | 127 static bool samNoSQ; // don't print @SQ header lines variable
327 samNoSQ = false; // don't print @SQ header lines in resetOptions()
1181 case ARG_SAM_NOSQ: samNoSQ = true; break; in parseOption()
3670 samc.printHeader(buf, rgid, rgs, printHd, !samNoSQ, printSq); in driver()
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| H A D | hisat2.cpp | 128 static bool samNoSQ; // don't print @SQ header lines variable
370 samNoSQ = false; // don't print @SQ header lines in resetOptions()
1340 case ARG_SAM_NOSQ: samNoSQ = true; break; in parseOption()
4127 samc.printHeader(buf, rgid, rgs, printHd, !samNoSQ, printSq); in driver()
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| /dports/biology/bowtie2/bowtie2-2.4.4/ |
| H A D | bt2_search.cpp | 137 static bool samNoSQ; // don't print @SQ header lines variable
339 samNoSQ = false; // don't print @SQ header lines in resetOptions()
1286 case ARG_SAM_NOSQ: samNoSQ = true; break; in parseOption()
4979 samc.printHeader(buf, rgid, rgs, printHd, !samNoSQ, printSq); in driver()
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