/dports/misc/p5-Data-Buffer/Data-Buffer-0.04/ |
H A D | test.pl | 30 my $save_off = $buffer->offset; 47 $buffer->set_offset($save_off); 48 ok($buffer->offset, $save_off);
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/dports/biology/emboss/EMBOSS-6.6.0/ajax/core/ |
H A D | ajbamindex.c | 348 ajulong save_off, n_mapped, n_unmapped, off_beg, off_end, n_no_coor; in bamIndexCore() local 370 save_off = last_off = bam_tell(fp); last_coor = 0xffffffffu; in bamIndexCore() 407 bamInsertOffset(idx->bindex[save_tid], save_bin, save_off, in bamIndexCore() 421 save_off = last_off; in bamIndexCore() 448 bamInsertOffset(idx->bindex[save_tid], save_bin, save_off, in bamIndexCore()
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/dports/biology/ugene/ugene-40.1/src/libs_3rdparty/samtools/src/samtools/ |
H A D | bam_index.c | 161 uint64_t save_off, last_off, n_mapped, n_unmapped, off_beg, off_end, n_no_coor; in bam_index_core() local 175 save_off = last_off = bam_tell(fp); last_coor = 0xffffffffu; in bam_index_core() 195 insert_offset(idx->index[save_tid], save_bin, save_off, last_off); in bam_index_core() 203 save_off = last_off; in bam_index_core() 219 insert_offset(idx->index[save_tid], save_bin, save_off, bam_tell(fp)); in bam_index_core()
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/dports/biology/stringtie/stringtie-2.1.1/samtools-0.1.18/ |
H A D | bam_index.c | 160 uint64_t save_off, last_off, n_mapped, n_unmapped, off_beg, off_end, n_no_coor; in bam_index_core() local 174 save_off = last_off = bam_tell(fp); last_coor = 0xffffffffu; in bam_index_core() 194 insert_offset(idx->index[save_tid], save_bin, save_off, last_off); in bam_index_core() 202 save_off = last_off; in bam_index_core() 218 insert_offset(idx->index[save_tid], save_bin, save_off, bam_tell(fp)); in bam_index_core()
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/dports/biology/seqan1/seqan-1.3.1/lib/samtools/ |
H A D | bam_index.c | 160 uint64_t save_off, last_off, n_mapped, n_unmapped, off_beg, off_end, n_no_coor; in bam_index_core() local 174 save_off = last_off = bam_tell(fp); last_coor = 0xffffffffu; in bam_index_core() 190 insert_offset(idx->index[save_tid], save_bin, save_off, last_off); in bam_index_core() 198 save_off = last_off; in bam_index_core() 214 insert_offset(idx->index[save_tid], save_bin, save_off, bam_tell(fp)); in bam_index_core()
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/dports/graphics/cimg/CImg-v.2.9.7/examples/ |
H A D | scene3d.cpp | 114 scene_pts.save_off(scene_prims,scene_cols,"output.off"); in main()
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H A D | image_surface3d.cpp | 98 points.save_off(primitives,colors,file_o); in main()
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/dports/graphics/gmic-qt/CImg-v.2.9.8/examples/ |
H A D | scene3d.cpp | 114 scene_pts.save_off(scene_prims,scene_cols,"output.off"); in main()
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H A D | image_surface3d.cpp | 98 points.save_off(primitives,colors,file_o); in main()
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/dports/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/ |
H A D | string.cpp | 2265 long int save_off = off; in findFirstOf() local 2284 off = save_off; in findFirstOf() 2315 long int save_off = off; in findFirstOf() local 2333 off = save_off; in findFirstOf() 2403 long int save_off = off; in findLastOf() local 2421 off = save_off; in findLastOf() 2450 long int save_off = off; in findLastOf() local 2468 off = save_off; in findLastOf()
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/dports/misc/xdelta3/xdelta-3.1.0/xdelta1/ |
H A D | xdelta.c | 725 guint save_page, save_off; in compute_copies() local 792 save_off = xpos.off; in compute_copies() 814 xpos.off = save_off; in compute_copies()
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/dports/misc/xdelta/xdelta-1.1.4/ |
H A D | xdelta.c | 725 guint save_page, save_off; in compute_copies() local 792 save_off = xpos.off; in compute_copies() 814 xpos.off = save_off; in compute_copies()
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/dports/editors/xvile/vile-9.8v/ |
H A D | input.c | 807 int save_off; in vl_ctype2tbuff() local 902 save_off = first_off; in vl_ctype2tbuff() 917 vl_get_offset = (C_NUM) save_off; in vl_ctype2tbuff() 939 (void) save_off; in vl_ctype2tbuff()
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H A D | random.c | 114 C_NUM save_off = -1; in liststuff() local 130 save_off = wp->w_dot.o; in liststuff() 167 gocol(save_off); in liststuff()
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/dports/editors/vile/vile-9.8v/ |
H A D | input.c | 807 int save_off; in vl_ctype2tbuff() local 902 save_off = first_off; in vl_ctype2tbuff() 917 vl_get_offset = (C_NUM) save_off; in vl_ctype2tbuff() 939 (void) save_off; in vl_ctype2tbuff()
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H A D | random.c | 114 C_NUM save_off = -1; in liststuff() local 130 save_off = wp->w_dot.o; in liststuff() 167 gocol(save_off); in liststuff()
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/dports/biology/kallisto/kallisto-0.46.1/ext/htslib/ |
H A D | hts.c | 1257 uint64_t last_off, save_off; member 1334 idx->z.save_off = idx->z.last_off = idx->z.off_beg = idx->z.off_end = offset0; in hts_idx_init() 1435 insert_to_b(idx->bidx[idx->z.save_tid], idx->z.save_bin, idx->z.save_off, final_offset); in hts_idx_finish() 1507 idx->z.save_off, idx->z.last_off) < 0) return -1; in hts_idx_push() 1518 idx->z.save_off = idx->z.last_off; in hts_idx_push()
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/dports/biology/vt/vt-0.57721/lib/htslib/ |
H A D | hts.c | 1298 uint64_t last_off, save_off; member 1375 idx->z.save_off = idx->z.last_off = idx->z.off_beg = idx->z.off_end = offset0; in hts_idx_init() 1476 insert_to_b(idx->bidx[idx->z.save_tid], idx->z.save_bin, idx->z.save_off, final_offset); in hts_idx_finish() 1548 idx->z.save_off, idx->z.last_off) < 0) return -1; in hts_idx_push() 1559 idx->z.save_off = idx->z.last_off; in hts_idx_push()
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/dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/ |
H A D | hts.c | 1321 uint64_t last_off, save_off; member 1398 idx->z.save_off = idx->z.last_off = idx->z.off_beg = idx->z.off_end = offset0; in hts_idx_init() 1499 insert_to_b(idx->bidx[idx->z.save_tid], idx->z.save_bin, idx->z.save_off, final_offset); in hts_idx_finish() 1571 idx->z.save_off, idx->z.last_off) < 0) return -1; in hts_idx_push() 1582 idx->z.save_off = idx->z.last_off; in hts_idx_push()
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/dports/biology/stacks/stacks-2.4/htslib/ |
H A D | hts.c | 1290 uint64_t last_off, save_off; member 1367 idx->z.save_off = idx->z.last_off = idx->z.off_beg = idx->z.off_end = offset0; in hts_idx_init() 1468 insert_to_b(idx->bidx[idx->z.save_tid], idx->z.save_bin, idx->z.save_off, final_offset); in hts_idx_finish() 1540 idx->z.save_off, idx->z.last_off) < 0) return -1; in hts_idx_push() 1551 idx->z.save_off = idx->z.last_off; in hts_idx_push()
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/dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/ |
H A D | hts.c | 1662 uint64_t last_off, save_off; member 1741 idx->z.save_off = idx->z.last_off = idx->z.off_beg = idx->z.off_end = offset0; in hts_idx_init() 1850 … ret |= insert_to_b(idx->bidx[idx->z.save_tid], idx->z.save_bin, idx->z.save_off, final_offset); in hts_idx_finish() 1947 idx->z.save_off, idx->z.last_off) < 0) return -1; in hts_idx_push() 1958 idx->z.save_off = idx->z.last_off; in hts_idx_push()
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/dports/biology/py-pysam/pysam-0.18.0/htslib/ |
H A D | hts.c | 2082 uint64_t last_off, save_off; member 2201 idx->z.save_off = idx->z.last_off = idx->z.off_beg = idx->z.off_end = offset0; in hts_idx_init() 2304 … ret |= insert_to_b(idx->bidx[idx->z.save_tid], idx->z.save_bin, idx->z.save_off, final_offset); in hts_idx_finish() 2401 idx->z.save_off, idx->z.last_off) < 0) return -1; in hts_idx_push() 2412 idx->z.save_off = idx->z.last_off; in hts_idx_push()
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/dports/biology/htslib/htslib-1.14/ |
H A D | hts.c | 2082 uint64_t last_off, save_off; member 2201 idx->z.save_off = idx->z.last_off = idx->z.off_beg = idx->z.off_end = offset0; in hts_idx_init() 2304 … ret |= insert_to_b(idx->bidx[idx->z.save_tid], idx->z.save_bin, idx->z.save_off, final_offset); in hts_idx_finish() 2401 idx->z.save_off, idx->z.last_off) < 0) return -1; in hts_idx_push() 2412 idx->z.save_off = idx->z.last_off; in hts_idx_push()
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/dports/lang/racket/racket-8.3/src/bc/src/ |
H A D | print.c | 1505 intptr_t save_alloc, save_pos, save_off, save_maxl; in print_substring() local 1512 save_off = pp->print_offset; in print_substring() 1549 pp->print_offset = save_off; in print_substring()
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/dports/lang/racket-minimal/racket-8.3/src/bc/src/ |
H A D | print.c | 1505 intptr_t save_alloc, save_pos, save_off, save_maxl; in print_substring() local 1512 save_off = pp->print_offset; in print_substring() 1549 pp->print_offset = save_off; in print_substring()
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