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Searched refs:save_off (Results 1 – 25 of 52) sorted by relevance

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/dports/misc/p5-Data-Buffer/Data-Buffer-0.04/
H A Dtest.pl30 my $save_off = $buffer->offset;
47 $buffer->set_offset($save_off);
48 ok($buffer->offset, $save_off);
/dports/biology/emboss/EMBOSS-6.6.0/ajax/core/
H A Dajbamindex.c348 ajulong save_off, n_mapped, n_unmapped, off_beg, off_end, n_no_coor; in bamIndexCore() local
370 save_off = last_off = bam_tell(fp); last_coor = 0xffffffffu; in bamIndexCore()
407 bamInsertOffset(idx->bindex[save_tid], save_bin, save_off, in bamIndexCore()
421 save_off = last_off; in bamIndexCore()
448 bamInsertOffset(idx->bindex[save_tid], save_bin, save_off, in bamIndexCore()
/dports/biology/ugene/ugene-40.1/src/libs_3rdparty/samtools/src/samtools/
H A Dbam_index.c161 uint64_t save_off, last_off, n_mapped, n_unmapped, off_beg, off_end, n_no_coor; in bam_index_core() local
175 save_off = last_off = bam_tell(fp); last_coor = 0xffffffffu; in bam_index_core()
195 insert_offset(idx->index[save_tid], save_bin, save_off, last_off); in bam_index_core()
203 save_off = last_off; in bam_index_core()
219 insert_offset(idx->index[save_tid], save_bin, save_off, bam_tell(fp)); in bam_index_core()
/dports/biology/stringtie/stringtie-2.1.1/samtools-0.1.18/
H A Dbam_index.c160 uint64_t save_off, last_off, n_mapped, n_unmapped, off_beg, off_end, n_no_coor; in bam_index_core() local
174 save_off = last_off = bam_tell(fp); last_coor = 0xffffffffu; in bam_index_core()
194 insert_offset(idx->index[save_tid], save_bin, save_off, last_off); in bam_index_core()
202 save_off = last_off; in bam_index_core()
218 insert_offset(idx->index[save_tid], save_bin, save_off, bam_tell(fp)); in bam_index_core()
/dports/biology/seqan1/seqan-1.3.1/lib/samtools/
H A Dbam_index.c160 uint64_t save_off, last_off, n_mapped, n_unmapped, off_beg, off_end, n_no_coor; in bam_index_core() local
174 save_off = last_off = bam_tell(fp); last_coor = 0xffffffffu; in bam_index_core()
190 insert_offset(idx->index[save_tid], save_bin, save_off, last_off); in bam_index_core()
198 save_off = last_off; in bam_index_core()
214 insert_offset(idx->index[save_tid], save_bin, save_off, bam_tell(fp)); in bam_index_core()
/dports/graphics/cimg/CImg-v.2.9.7/examples/
H A Dscene3d.cpp114 scene_pts.save_off(scene_prims,scene_cols,"output.off"); in main()
H A Dimage_surface3d.cpp98 points.save_off(primitives,colors,file_o); in main()
/dports/graphics/gmic-qt/CImg-v.2.9.8/examples/
H A Dscene3d.cpp114 scene_pts.save_off(scene_prims,scene_cols,"output.off"); in main()
H A Dimage_surface3d.cpp98 points.save_off(primitives,colors,file_o); in main()
/dports/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/
H A Dstring.cpp2265 long int save_off = off; in findFirstOf() local
2284 off = save_off; in findFirstOf()
2315 long int save_off = off; in findFirstOf() local
2333 off = save_off; in findFirstOf()
2403 long int save_off = off; in findLastOf() local
2421 off = save_off; in findLastOf()
2450 long int save_off = off; in findLastOf() local
2468 off = save_off; in findLastOf()
/dports/misc/xdelta3/xdelta-3.1.0/xdelta1/
H A Dxdelta.c725 guint save_page, save_off; in compute_copies() local
792 save_off = xpos.off; in compute_copies()
814 xpos.off = save_off; in compute_copies()
/dports/misc/xdelta/xdelta-1.1.4/
H A Dxdelta.c725 guint save_page, save_off; in compute_copies() local
792 save_off = xpos.off; in compute_copies()
814 xpos.off = save_off; in compute_copies()
/dports/editors/xvile/vile-9.8v/
H A Dinput.c807 int save_off; in vl_ctype2tbuff() local
902 save_off = first_off; in vl_ctype2tbuff()
917 vl_get_offset = (C_NUM) save_off; in vl_ctype2tbuff()
939 (void) save_off; in vl_ctype2tbuff()
H A Drandom.c114 C_NUM save_off = -1; in liststuff() local
130 save_off = wp->w_dot.o; in liststuff()
167 gocol(save_off); in liststuff()
/dports/editors/vile/vile-9.8v/
H A Dinput.c807 int save_off; in vl_ctype2tbuff() local
902 save_off = first_off; in vl_ctype2tbuff()
917 vl_get_offset = (C_NUM) save_off; in vl_ctype2tbuff()
939 (void) save_off; in vl_ctype2tbuff()
H A Drandom.c114 C_NUM save_off = -1; in liststuff() local
130 save_off = wp->w_dot.o; in liststuff()
167 gocol(save_off); in liststuff()
/dports/biology/kallisto/kallisto-0.46.1/ext/htslib/
H A Dhts.c1257 uint64_t last_off, save_off; member
1334 idx->z.save_off = idx->z.last_off = idx->z.off_beg = idx->z.off_end = offset0; in hts_idx_init()
1435 insert_to_b(idx->bidx[idx->z.save_tid], idx->z.save_bin, idx->z.save_off, final_offset); in hts_idx_finish()
1507 idx->z.save_off, idx->z.last_off) < 0) return -1; in hts_idx_push()
1518 idx->z.save_off = idx->z.last_off; in hts_idx_push()
/dports/biology/vt/vt-0.57721/lib/htslib/
H A Dhts.c1298 uint64_t last_off, save_off; member
1375 idx->z.save_off = idx->z.last_off = idx->z.off_beg = idx->z.off_end = offset0; in hts_idx_init()
1476 insert_to_b(idx->bidx[idx->z.save_tid], idx->z.save_bin, idx->z.save_off, final_offset); in hts_idx_finish()
1548 idx->z.save_off, idx->z.last_off) < 0) return -1; in hts_idx_push()
1559 idx->z.save_off = idx->z.last_off; in hts_idx_push()
/dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/
H A Dhts.c1321 uint64_t last_off, save_off; member
1398 idx->z.save_off = idx->z.last_off = idx->z.off_beg = idx->z.off_end = offset0; in hts_idx_init()
1499 insert_to_b(idx->bidx[idx->z.save_tid], idx->z.save_bin, idx->z.save_off, final_offset); in hts_idx_finish()
1571 idx->z.save_off, idx->z.last_off) < 0) return -1; in hts_idx_push()
1582 idx->z.save_off = idx->z.last_off; in hts_idx_push()
/dports/biology/stacks/stacks-2.4/htslib/
H A Dhts.c1290 uint64_t last_off, save_off; member
1367 idx->z.save_off = idx->z.last_off = idx->z.off_beg = idx->z.off_end = offset0; in hts_idx_init()
1468 insert_to_b(idx->bidx[idx->z.save_tid], idx->z.save_bin, idx->z.save_off, final_offset); in hts_idx_finish()
1540 idx->z.save_off, idx->z.last_off) < 0) return -1; in hts_idx_push()
1551 idx->z.save_off = idx->z.last_off; in hts_idx_push()
/dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/
H A Dhts.c1662 uint64_t last_off, save_off; member
1741 idx->z.save_off = idx->z.last_off = idx->z.off_beg = idx->z.off_end = offset0; in hts_idx_init()
1850 … ret |= insert_to_b(idx->bidx[idx->z.save_tid], idx->z.save_bin, idx->z.save_off, final_offset); in hts_idx_finish()
1947 idx->z.save_off, idx->z.last_off) < 0) return -1; in hts_idx_push()
1958 idx->z.save_off = idx->z.last_off; in hts_idx_push()
/dports/biology/py-pysam/pysam-0.18.0/htslib/
H A Dhts.c2082 uint64_t last_off, save_off; member
2201 idx->z.save_off = idx->z.last_off = idx->z.off_beg = idx->z.off_end = offset0; in hts_idx_init()
2304 … ret |= insert_to_b(idx->bidx[idx->z.save_tid], idx->z.save_bin, idx->z.save_off, final_offset); in hts_idx_finish()
2401 idx->z.save_off, idx->z.last_off) < 0) return -1; in hts_idx_push()
2412 idx->z.save_off = idx->z.last_off; in hts_idx_push()
/dports/biology/htslib/htslib-1.14/
H A Dhts.c2082 uint64_t last_off, save_off; member
2201 idx->z.save_off = idx->z.last_off = idx->z.off_beg = idx->z.off_end = offset0; in hts_idx_init()
2304 … ret |= insert_to_b(idx->bidx[idx->z.save_tid], idx->z.save_bin, idx->z.save_off, final_offset); in hts_idx_finish()
2401 idx->z.save_off, idx->z.last_off) < 0) return -1; in hts_idx_push()
2412 idx->z.save_off = idx->z.last_off; in hts_idx_push()
/dports/lang/racket/racket-8.3/src/bc/src/
H A Dprint.c1505 intptr_t save_alloc, save_pos, save_off, save_maxl; in print_substring() local
1512 save_off = pp->print_offset; in print_substring()
1549 pp->print_offset = save_off; in print_substring()
/dports/lang/racket-minimal/racket-8.3/src/bc/src/
H A Dprint.c1505 intptr_t save_alloc, save_pos, save_off, save_maxl; in print_substring() local
1512 save_off = pp->print_offset; in print_substring()
1549 pp->print_offset = save_off; in print_substring()

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