Home
last modified time | relevance | path

Searched refs:seq_int2_last (Results 1 – 4 of 4) sorted by relevance

/dports/biology/ncbi-toolkit/ncbi/algo/blast/api/
H A Dblast_seqalign.c838 SeqIntPtr seq_int1_last = NULL, seq_int2_last = NULL; in OOFBlastHSPToSeqAlign() local
1032 seq_int2_last = seq_int2; /* Will be used to adjust "to" value */ in OOFBlastHSPToSeqAlign()
1082 seq_int2_last = seq_int2; /* Will be used to adjust "to" value */ in OOFBlastHSPToSeqAlign()
1130 seq_int2_last = seq_int2; in OOFBlastHSPToSeqAlign()
1142 if(seq_int2_last != NULL) { in OOFBlastHSPToSeqAlign()
1145 seq_int2_last->to = start2 - 1; in OOFBlastHSPToSeqAlign()
1148 seq_int2_last->from = original_length2 - start2; in OOFBlastHSPToSeqAlign()
1153 if(seq_int2_last->from > seq_int2_last->to) { in OOFBlastHSPToSeqAlign()
1156 seq_int2_last->to += 3; in OOFBlastHSPToSeqAlign()
1158 seq_int2_last->from -= 3; in OOFBlastHSPToSeqAlign()
[all …]
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/api/
H A Dblast_seqalign.cpp782 CRef<CSeq_interval> seq_int2_last; in s_OOFBlastHSP2SeqAlign() local
918 seq_int2_last.Reset(&slp2->SetInt()); /* Will be used to adjust "to" value */ in s_OOFBlastHSP2SeqAlign()
959 seq_int2_last.Reset(&slp2->SetInt()); /* Will be used to adjust "to" value */ in s_OOFBlastHSP2SeqAlign()
997 seq_int2_last.Reset(&slp2->SetInt()); in s_OOFBlastHSP2SeqAlign()
1008 if(seq_int2_last) { in s_OOFBlastHSP2SeqAlign()
1011 seq_int2_last->SetTo(start2 - 1); in s_OOFBlastHSP2SeqAlign()
1014 seq_int2_last->SetFrom(original_length2 - start2); in s_OOFBlastHSP2SeqAlign()
1019 if(seq_int2_last->GetFrom() > seq_int2_last->GetTo()) { in s_OOFBlastHSP2SeqAlign()
1022 seq_int2_last->SetTo(seq_int2_last->GetTo() + 3); in s_OOFBlastHSP2SeqAlign()
1024 seq_int2_last->SetFrom(seq_int2_last->GetFrom() - 3); in s_OOFBlastHSP2SeqAlign()
[all …]
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/api/
H A Dblast_seqalign.cpp782 CRef<CSeq_interval> seq_int2_last; in s_OOFBlastHSP2SeqAlign() local
918 seq_int2_last.Reset(&slp2->SetInt()); /* Will be used to adjust "to" value */ in s_OOFBlastHSP2SeqAlign()
959 seq_int2_last.Reset(&slp2->SetInt()); /* Will be used to adjust "to" value */ in s_OOFBlastHSP2SeqAlign()
997 seq_int2_last.Reset(&slp2->SetInt()); in s_OOFBlastHSP2SeqAlign()
1008 if(seq_int2_last) { in s_OOFBlastHSP2SeqAlign()
1011 seq_int2_last->SetTo(start2 - 1); in s_OOFBlastHSP2SeqAlign()
1014 seq_int2_last->SetFrom(original_length2 - start2); in s_OOFBlastHSP2SeqAlign()
1019 if(seq_int2_last->GetFrom() > seq_int2_last->GetTo()) { in s_OOFBlastHSP2SeqAlign()
1022 seq_int2_last->SetTo(seq_int2_last->GetTo() + 3); in s_OOFBlastHSP2SeqAlign()
1024 seq_int2_last->SetFrom(seq_int2_last->GetFrom() - 3); in s_OOFBlastHSP2SeqAlign()
[all …]
/dports/biology/ncbi-toolkit/ncbi/tools/
H A Dgapxdrop.c2581 SeqIntPtr seq_int1_last = NULL, seq_int2_last = NULL; in OOFGapXEditBlockToSeqAlign() local
2769 seq_int2_last = seq_int2; /* Will be used to adjust "to" value */ in OOFGapXEditBlockToSeqAlign()
2825 seq_int2_last = seq_int2; /* Will be used to adjust "to" value */ in OOFGapXEditBlockToSeqAlign()
2872 seq_int2_last = seq_int2; in OOFGapXEditBlockToSeqAlign()
2886 if(seq_int2_last != NULL) { in OOFGapXEditBlockToSeqAlign()
2889 seq_int2_last->to = start2 - 1; in OOFGapXEditBlockToSeqAlign()
2892 seq_int2_last->from = original_length2 - start2; in OOFGapXEditBlockToSeqAlign()
2897 if(seq_int2_last->from > seq_int2_last->to) { in OOFGapXEditBlockToSeqAlign()
2900 seq_int2_last->to += 3; in OOFGapXEditBlockToSeqAlign()
2902 seq_int2_last->from -= 3; in OOFGapXEditBlockToSeqAlign()
[all …]