Searched refs:single_goodness (Results 1 – 1 of 1) sorted by relevance
9747 int single_score, dual_score_1, dual_score_2, single_goodness, dual_goodness, in traverse_dual_genome_gap() local9861 single_goodness = (single_nmatches + nindels) + MISMATCH*nmismatches; in traverse_dual_genome_gap()9863 single_goodness = single_nmatches + MISMATCH*nmismatches + QOPEN*(nopens-1) + QINDEL*nindels; in traverse_dual_genome_gap()10012 single_goodness,dual_goodness)); in traverse_dual_genome_gap()10018 single_canonical_p == false && single_goodness <= dual_goodness) { in traverse_dual_genome_gap()10079 if (right_goodness > single_goodness) { in traverse_dual_genome_gap()10083 single_goodness = right_goodness; in traverse_dual_genome_gap()10118 if (left_goodness > single_goodness) { in traverse_dual_genome_gap()10122 single_goodness = left_goodness; in traverse_dual_genome_gap()