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Searched refs:splicestringpool (Results 1 – 6 of 6) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A Dsplicetrie_build.h44 Splicestringpool_T splicestringpool);
54 Splicestringpool_T splicestringpool);
H A Dsplicetrie_build.c332 Splicestringpool_T splicestringpool) { in allelic_combinations() argument
363 splicestrings = Splicestringpool_push(splicestrings,splicestringpool, in allelic_combinations()
387 Splicestringpool_T splicestringpool) { in Splicetrie_retrieve_via_splicesites() argument
619 (*splicestrings)[k] = Splicestringpool_push(NULL,splicestringpool,refstring,position,k); in Splicetrie_retrieve_via_splicesites()
659 (*splicestrings)[k] = Splicestringpool_push(NULL,splicestringpool,refstring,position,k); in Splicetrie_retrieve_via_splicesites()
701 (*splicestrings)[k] = Splicestringpool_push(NULL,splicestringpool,refstring,position,k); in Splicetrie_retrieve_via_splicesites()
807 Splicestringpool_T splicestringpool) { in Splicetrie_retrieve_via_introns() argument
1001 (*splicestrings)[k] = Splicestringpool_push(NULL,splicestringpool,refstring,position,k); in Splicetrie_retrieve_via_introns()
1041 (*splicestrings)[k] = Splicestringpool_push(NULL,splicestringpool,refstring,position,k); in Splicetrie_retrieve_via_introns()
1100 (*splicestrings)[k] = Splicestringpool_push(NULL,splicestringpool,refstring,position,k); in Splicetrie_retrieve_via_introns()
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H A DMakefile.am190 …splicestringpool.c splicestringpool.h splicetrie_build.c splicetrie_build.h splicetrie.c splicetri…
H A DMakefile.in291 gmap_avx2-splicestringpool.$(OBJEXT) \
352 gmap_avx512-splicestringpool.$(OBJEXT) \
490 gmap_nosimd-splicestringpool.$(OBJEXT) \
548 gmap_sse2-splicestringpool.$(OBJEXT) \
607 gmap_sse41-splicestringpool.$(OBJEXT) \
667 gmap_sse42-splicestringpool.$(OBJEXT) \
727 gmap_ssse3-splicestringpool.$(OBJEXT) \
830 gmapl_avx2-splicestringpool.$(OBJEXT) \
1119 gmapl_sse2-splicestringpool.$(OBJEXT) \
1182 gmapl_sse41-splicestringpool.$(OBJEXT) \
[all …]
H A Dgmap.c6518 Splicestringpool_T splicestringpool; in main() local
6905 splicestringpool = Splicestringpool_new(); in main()
6911 splicestringpool); in main()
6933 Splicestringpool_free(&splicestringpool); in main()
6937 splicestringpool = Splicestringpool_new(); in main()
6942 splicestringpool); in main()
6959 Splicestringpool_free(&splicestringpool); in main()
/dports/biology/gmap/gmap-2020-09-12/
H A DChangeLog1336 shortread.h, splice.c, splice.h, splicestringpool.c, splicetrie.c,
2508 splice.h, splicestringpool.c, splicetrie.c, splicetrie.h, stage1.c,
7074 * splicestringpool.c: Changed memory procedures to use standard pool instead
7087 * Makefile.gsnaptoo.am, splicestringpool.c, splicestringpool.h,