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Searched refs:splicing_file (Results 1 – 3 of 3) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A Dgsnap.c410 static char *splicing_file = (char *) NULL; variable
2354 splicing_file = optarg; in parse_command_line()
3271 if (splicing_file != NULL) { in worker_setup()
3273 if ((splicing_iit = IIT_read(splicing_file,/*name*/NULL,/*readonlyp*/true,/*divread*/READ_ALL, in worker_setup()
3275 fprintf(stderr,"Reading splicing file %s locally...",splicing_file); in worker_setup()
3278 …iitfile = (char *) CALLOC(strlen(user_splicingdir)+strlen("/")+strlen(splicing_file)+1,sizeof(char… in worker_setup()
3279 sprintf(iitfile,"%s/%s",user_splicingdir,splicing_file); in worker_setup()
3290 strlen(splicing_file)+1,sizeof(char)); in worker_setup()
3291 sprintf(iitfile,"%s/%s",mapdir,splicing_file); in worker_setup()
3300 fprintf(stderr,"Either install file %s or specify a full directory path\n",splicing_file); in worker_setup()
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H A Dgmap.c475 static char *splicing_file = (char *) NULL; variable
6112 case 's': splicing_file = optarg; knownsplicingp = true; break; in parse_command_line()
6726 if (splicing_file != NULL) { in main()
6730 fprintf(stderr,"Reading splicing file %s locally...",splicing_file); in main()
6733 sprintf(iitfile,"%s/%s",user_splicingdir,splicing_file); in main()
6734 if ((splicing_iit = IIT_read(splicing_file,/*name*/NULL,/*readonlyp*/true,/*divread*/READ_ALL, in main()
6736 fprintf(stderr,"Reading splicing file %s locally...",splicing_file); in main()
6745 strlen(splicing_file)+1,sizeof(char)); in main()
6746 sprintf(iitfile,"%s/%s",mapdir,splicing_file); in main()
6755 fprintf(stderr,"Either install file %s or specify a full directory path\n",splicing_file); in main()
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/dports/biology/gmap/gmap-2020-09-12/
H A DREADME508 (or "-N 1") flag and/or the "-s <splicing_file>" flag to GSNAP.