Searched refs:splicing_file (Results 1 – 3 of 3) sorted by relevance
/dports/biology/gmap/gmap-2020-09-12/src/ |
H A D | gsnap.c | 410 static char *splicing_file = (char *) NULL; variable 2354 splicing_file = optarg; in parse_command_line() 3271 if (splicing_file != NULL) { in worker_setup() 3273 if ((splicing_iit = IIT_read(splicing_file,/*name*/NULL,/*readonlyp*/true,/*divread*/READ_ALL, in worker_setup() 3275 fprintf(stderr,"Reading splicing file %s locally...",splicing_file); in worker_setup() 3278 …iitfile = (char *) CALLOC(strlen(user_splicingdir)+strlen("/")+strlen(splicing_file)+1,sizeof(char… in worker_setup() 3279 sprintf(iitfile,"%s/%s",user_splicingdir,splicing_file); in worker_setup() 3290 strlen(splicing_file)+1,sizeof(char)); in worker_setup() 3291 sprintf(iitfile,"%s/%s",mapdir,splicing_file); in worker_setup() 3300 fprintf(stderr,"Either install file %s or specify a full directory path\n",splicing_file); in worker_setup() [all …]
|
H A D | gmap.c | 475 static char *splicing_file = (char *) NULL; variable 6112 case 's': splicing_file = optarg; knownsplicingp = true; break; in parse_command_line() 6726 if (splicing_file != NULL) { in main() 6730 fprintf(stderr,"Reading splicing file %s locally...",splicing_file); in main() 6733 sprintf(iitfile,"%s/%s",user_splicingdir,splicing_file); in main() 6734 if ((splicing_iit = IIT_read(splicing_file,/*name*/NULL,/*readonlyp*/true,/*divread*/READ_ALL, in main() 6736 fprintf(stderr,"Reading splicing file %s locally...",splicing_file); in main() 6745 strlen(splicing_file)+1,sizeof(char)); in main() 6746 sprintf(iitfile,"%s/%s",mapdir,splicing_file); in main() 6755 fprintf(stderr,"Either install file %s or specify a full directory path\n",splicing_file); in main() [all …]
|
/dports/biology/gmap/gmap-2020-09-12/ |
H A D | README | 508 (or "-N 1") flag and/or the "-s <splicing_file>" flag to GSNAP.
|