Home
last modified time | relevance | path

Searched refs:sr_sort_t (Results 1 – 21 of 21) sorted by relevance

/dports/biology/vt/vt-0.57721/lib/htslib/
H A Dbcf_sr_sort.h97 sr_sort_t; typedef
99 sr_sort_t *bcf_sr_sort_init(sr_sort_t *srt);
100 void bcf_sr_sort_reset(sr_sort_t *srt);
101 int bcf_sr_sort_next(bcf_srs_t *readers, sr_sort_t *srt, const char *chr, int pos);
102 int bcf_sr_sort_set_active(sr_sort_t *srt, int i);
103 int bcf_sr_sort_add_active(sr_sort_t *srt, int i);
104 void bcf_sr_sort_destroy(sr_sort_t *srt);
105 void bcf_sr_sort_remove_reader(bcf_srs_t *readers, sr_sort_t *srt, int i);
H A Dbcf_sr_sort.c71 static void bcf_sr_init_scores(sr_sort_t *srt) in bcf_sr_init_scores()
203 void remove_vset(sr_sort_t *srt, int jvset) in remove_vset()
242 void push_vset(sr_sort_t *srt, int ivset) in push_vset()
272 void debug_vsets(sr_sort_t *srt) in debug_vsets()
293 void debug_vbuf(sr_sort_t *srt) in debug_vbuf()
309 char *grp_create_key(sr_sort_t *srt) in grp_create_key()
330 int bcf_sr_sort_set_active(sr_sort_t *srt, int idx) in bcf_sr_sort_set_active()
642 sr_sort_t *bcf_sr_sort_init(sr_sort_t *srt) in bcf_sr_sort_init()
645 memset(srt,0,sizeof(sr_sort_t)); in bcf_sr_sort_init()
648 void bcf_sr_sort_reset(sr_sort_t *srt) in bcf_sr_sort_reset()
[all …]
H A Dsynced_bcf_reader.c59 sr_sort_t sort;
/dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/
H A Dbcf_sr_sort.h97 sr_sort_t; typedef
99 sr_sort_t *bcf_sr_sort_init(sr_sort_t *srt);
100 void bcf_sr_sort_reset(sr_sort_t *srt);
101 int bcf_sr_sort_next(bcf_srs_t *readers, sr_sort_t *srt, const char *chr, int pos);
102 int bcf_sr_sort_set_active(sr_sort_t *srt, int i);
103 int bcf_sr_sort_add_active(sr_sort_t *srt, int i);
104 void bcf_sr_sort_destroy(sr_sort_t *srt);
105 void bcf_sr_sort_remove_reader(bcf_srs_t *readers, sr_sort_t *srt, int i);
H A Dbcf_sr_sort.c73 static void bcf_sr_init_scores(sr_sort_t *srt) in bcf_sr_init_scores()
205 void remove_vset(sr_sort_t *srt, int jvset) in remove_vset()
244 void push_vset(sr_sort_t *srt, int ivset) in push_vset()
274 void debug_vsets(sr_sort_t *srt) in debug_vsets()
295 void debug_vbuf(sr_sort_t *srt) in debug_vbuf()
311 char *grp_create_key(sr_sort_t *srt) in grp_create_key()
332 int bcf_sr_sort_set_active(sr_sort_t *srt, int idx) in bcf_sr_sort_set_active()
644 sr_sort_t *bcf_sr_sort_init(sr_sort_t *srt) in bcf_sr_sort_init()
647 memset(srt,0,sizeof(sr_sort_t)); in bcf_sr_sort_init()
650 void bcf_sr_sort_reset(sr_sort_t *srt) in bcf_sr_sort_reset()
[all …]
H A Dsynced_bcf_reader.c59 sr_sort_t sort;
/dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/
H A Dbcf_sr_sort.h98 sr_sort_t; typedef
100 sr_sort_t *bcf_sr_sort_init(sr_sort_t *srt);
101 void bcf_sr_sort_reset(sr_sort_t *srt);
102 int bcf_sr_sort_next(bcf_srs_t *readers, sr_sort_t *srt, const char *chr, hts_pos_t pos);
103 int bcf_sr_sort_set_active(sr_sort_t *srt, int i);
104 int bcf_sr_sort_add_active(sr_sort_t *srt, int i);
105 void bcf_sr_sort_destroy(sr_sort_t *srt);
106 void bcf_sr_sort_remove_reader(bcf_srs_t *readers, sr_sort_t *srt, int i);
H A Dbcf_sr_sort.c60 static void bcf_sr_init_scores(sr_sort_t *srt) in bcf_sr_init_scores()
192 static void remove_vset(sr_sort_t *srt, int jvset) in remove_vset()
232 static int push_vset(sr_sort_t *srt, int ivset) in push_vset()
263 void debug_vsets(sr_sort_t *srt) in debug_vsets()
284 void debug_vbuf(sr_sort_t *srt) in debug_vbuf()
300 static char *grp_create_key(sr_sort_t *srt) in grp_create_key()
321 int bcf_sr_sort_set_active(sr_sort_t *srt, int idx) in bcf_sr_sort_set_active()
643 sr_sort_t *bcf_sr_sort_init(sr_sort_t *srt) in bcf_sr_sort_init()
646 memset(srt,0,sizeof(sr_sort_t)); in bcf_sr_sort_init()
649 void bcf_sr_sort_reset(sr_sort_t *srt) in bcf_sr_sort_reset()
[all …]
H A Dsynced_bcf_reader.c69 sr_sort_t sort;
/dports/biology/py-pysam/pysam-0.18.0/htslib/
H A Dbcf_sr_sort.h98 sr_sort_t; typedef
100 sr_sort_t *bcf_sr_sort_init(sr_sort_t *srt);
101 void bcf_sr_sort_reset(sr_sort_t *srt);
102 int bcf_sr_sort_next(bcf_srs_t *readers, sr_sort_t *srt, const char *chr, hts_pos_t pos);
103 int bcf_sr_sort_set_active(sr_sort_t *srt, int i);
104 int bcf_sr_sort_add_active(sr_sort_t *srt, int i);
105 void bcf_sr_sort_destroy(sr_sort_t *srt);
106 void bcf_sr_sort_remove_reader(bcf_srs_t *readers, sr_sort_t *srt, int i);
H A Dbcf_sr_sort.c60 static void bcf_sr_init_scores(sr_sort_t *srt) in bcf_sr_init_scores()
192 static void remove_vset(sr_sort_t *srt, int jvset) in remove_vset()
232 static int push_vset(sr_sort_t *srt, int ivset) in push_vset()
264 void debug_vsets(sr_sort_t *srt) in debug_vsets()
286 void debug_vbuf(sr_sort_t *srt) in debug_vbuf()
302 static char *grp_create_key(sr_sort_t *srt) in grp_create_key()
323 int bcf_sr_sort_set_active(sr_sort_t *srt, int idx) in bcf_sr_sort_set_active()
665 sr_sort_t *bcf_sr_sort_init(sr_sort_t *srt) in bcf_sr_sort_init()
668 memset(srt,0,sizeof(sr_sort_t)); in bcf_sr_sort_init()
671 void bcf_sr_sort_reset(sr_sort_t *srt) in bcf_sr_sort_reset()
[all …]
H A Dsynced_bcf_reader.c69 sr_sort_t sort;
/dports/biology/htslib/htslib-1.14/
H A Dbcf_sr_sort.h98 sr_sort_t; typedef
100 sr_sort_t *bcf_sr_sort_init(sr_sort_t *srt);
101 void bcf_sr_sort_reset(sr_sort_t *srt);
102 int bcf_sr_sort_next(bcf_srs_t *readers, sr_sort_t *srt, const char *chr, hts_pos_t pos);
103 int bcf_sr_sort_set_active(sr_sort_t *srt, int i);
104 int bcf_sr_sort_add_active(sr_sort_t *srt, int i);
105 void bcf_sr_sort_destroy(sr_sort_t *srt);
106 void bcf_sr_sort_remove_reader(bcf_srs_t *readers, sr_sort_t *srt, int i);
H A Dbcf_sr_sort.c60 static void bcf_sr_init_scores(sr_sort_t *srt) in bcf_sr_init_scores()
192 static void remove_vset(sr_sort_t *srt, int jvset) in remove_vset()
232 static int push_vset(sr_sort_t *srt, int ivset) in push_vset()
264 void debug_vsets(sr_sort_t *srt) in debug_vsets()
286 void debug_vbuf(sr_sort_t *srt) in debug_vbuf()
302 static char *grp_create_key(sr_sort_t *srt) in grp_create_key()
323 int bcf_sr_sort_set_active(sr_sort_t *srt, int idx) in bcf_sr_sort_set_active()
665 sr_sort_t *bcf_sr_sort_init(sr_sort_t *srt) in bcf_sr_sort_init()
668 memset(srt,0,sizeof(sr_sort_t)); in bcf_sr_sort_init()
671 void bcf_sr_sort_reset(sr_sort_t *srt) in bcf_sr_sort_reset()
[all …]
H A Dsynced_bcf_reader.c69 sr_sort_t sort;
/dports/biology/stacks/stacks-2.4/htslib/
H A Dbcf_sr_sort.h97 sr_sort_t; typedef
99 sr_sort_t *bcf_sr_sort_init(sr_sort_t *srt);
100 int bcf_sr_sort_next(bcf_srs_t *readers, sr_sort_t *srt, const char *chr, int pos);
101 int bcf_sr_sort_set_active(sr_sort_t *srt, int i);
102 int bcf_sr_sort_add_active(sr_sort_t *srt, int i);
103 void bcf_sr_sort_destroy(sr_sort_t *srt);
104 void bcf_sr_sort_remove_reader(bcf_srs_t *readers, sr_sort_t *srt, int i);
H A Dbcf_sr_sort.c71 static void bcf_sr_init_scores(sr_sort_t *srt) in bcf_sr_init_scores()
203 void remove_vset(sr_sort_t *srt, int jvset) in remove_vset()
242 void push_vset(sr_sort_t *srt, int ivset) in push_vset()
272 void debug_vsets(sr_sort_t *srt) in debug_vsets()
293 void debug_vbuf(sr_sort_t *srt) in debug_vbuf()
309 char *grp_create_key(sr_sort_t *srt) in grp_create_key()
330 int bcf_sr_sort_set_active(sr_sort_t *srt, int idx) in bcf_sr_sort_set_active()
337 int bcf_sr_sort_add_active(sr_sort_t *srt, int idx) in bcf_sr_sort_add_active()
636 sr_sort_t *bcf_sr_sort_init(sr_sort_t *srt) in bcf_sr_sort_init()
639 memset(srt,0,sizeof(sr_sort_t)); in bcf_sr_sort_init()
[all …]
H A Dsynced_bcf_reader.c59 sr_sort_t sort;
/dports/biology/kallisto/kallisto-0.46.1/ext/htslib/
H A Dbcf_sr_sort.h96 sr_sort_t; typedef
98 sr_sort_t *bcf_sr_sort_init(sr_sort_t *srt);
99 int bcf_sr_sort_next(bcf_srs_t *readers, sr_sort_t *srt, const char *chr, int pos);
100 void bcf_sr_sort_destroy(sr_sort_t *srt);
101 void bcf_sr_sort_remove_reader(bcf_srs_t *readers, sr_sort_t *srt, int i);
H A Dbcf_sr_sort.c71 static void bcf_sr_init_scores(sr_sort_t *srt) in bcf_sr_init_scores()
203 void remove_vset(sr_sort_t *srt, int jvset) in remove_vset()
218 int merge_vsets(sr_sort_t *srt, int ivset, int jvset) in merge_vsets()
242 void push_vset(sr_sort_t *srt, int ivset) in push_vset()
270 void debug_vsets(sr_sort_t *srt) in debug_vsets()
288 void debug_vbuf(sr_sort_t *srt) in debug_vbuf()
302 char *grp_create_key(sr_sort_t *srt) in grp_create_key()
610 sr_sort_t *bcf_sr_sort_init(sr_sort_t *srt) in bcf_sr_sort_init()
612 if ( !srt ) return calloc(1,sizeof(sr_sort_t)); in bcf_sr_sort_init()
613 memset(srt,0,sizeof(sr_sort_t)); in bcf_sr_sort_init()
[all …]
H A Dsynced_bcf_reader.c59 sr_sort_t sort;