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Searched refs:strand_str (Results 1 – 6 of 6) sorted by relevance

/dports/biology/cufflinks/cufflinks-2.2.1-89-gdc3b0cb/src/
H A Dgenes.cpp40 const char* strand_str = NULL; in get_gtf() local
42 strand_str = "."; in get_gtf()
44 strand_str = "+"; in get_gtf()
46 strand_str = "-"; in get_gtf()
63 strand_str, in get_gtf()
81 strand_str, in get_gtf()
109 strand_str, in get_gtf()
/dports/biology/biolibc/biolibc-0.2.1/
H A Dgff.c121 strand_str[BL_GFF_STRAND_MAX_CHARS + 1], in bl_gff_read() local
229 if ( (delim = tsv_read_field(gff_stream, strand_str, in bl_gff_read()
233 strand_str); in bl_gff_read()
237 gff_feature->strand = *strand_str; in bl_gff_read()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/readers/bam/test/
H A Dbam_test.cpp668 const char* strand_str = ""; in Run() local
673 strand_str = " plus"; in Run()
676 strand_str = " minus"; in Run()
680 strand_str = " unknown"; in Run()
693 << strand_str << " " in Run()
819 out << "Strand:" << strand_str << " "; in Run()
826 out << "Strand:" << strand_str << " "; in Run()
835 out << "Strand:" << strand_str << " "; in Run()
844 out << "Strand:" << strand_str << " "; in Run()
861 << strand_str << " " in Run()
H A Dbam_compare.cpp453 const char* strand_str = ""; in Run() local
458 strand_str = " plus"; in Run()
461 strand_str = " minus"; in Run()
465 strand_str = " unknown"; in Run()
478 << strand_str << " " in Run()
586 out << "Strand:" << strand_str << " "; in Run()
/dports/biology/subread/subread-2.0.2-source/src/
H A DHelperFunctions.c1120 char * strand_str = strtok_r(NULL,"\t", &token_temp); in load_features_annotation() local
1121 if(strand_str == NULL) in load_features_annotation()
1124 is_negative_strand = ('-' ==strand_str[0]); in load_features_annotation()
H A DreadSummary.c1151 char * strand_str = strtok_r(NULL,"\t", &token_temp); in load_feature_info() local
1152 if(strand_str == NULL) in load_feature_info()
1155 ret_features[xk1].is_negative_strand = ('+' ==strand_str[0])?0:(('-' ==strand_str[0])?1:-1); in load_feature_info()
1240 char * strand_str = strtok_r(NULL,"\t", &token_temp); in load_feature_info() local
1241 …ret_features[xk1].is_negative_strand = ('-' == strand_str[0])?1:( ('+' == strand_str[0])?0:-1 );//… in load_feature_info()